Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30169
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 83 1e-16
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 77 2e-14
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 77 2e-14
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 77 2e-14
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 36 0.021
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.79
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.79
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.0
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 29 2.4
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 29 2.4
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 29 2.4
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 29 2.4
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 29 2.4
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 29 2.4
AL021480-1|CAA16326.1| 133|Caenorhabditis elegans Hypothetical ... 29 2.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 3.2
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 29 4.2
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 5.6
AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical... 28 5.6
AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical... 28 5.6
AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical... 28 5.6
Z96048-1|CAB09419.1| 351|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82051-8|CAB04814.1| 349|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 7.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 7.4
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 7.4
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 7.4
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 7.4
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 27 9.8
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 27 9.8
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 27 9.8
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 27 9.8
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGCD+KAT+F+SH++TNY AV +K EIA +SI+H E NA + W EM
Sbjct: 1557 NPNGCDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISHESLE----NANTNRWLNEMD 1612
Query: 183 GMRVIIEKFSNITDNSVVGVRAP 251
G R I+ KF + +VG+R+P
Sbjct: 1613 GQRRILAKFGGAPEEEIVGIRSP 1635
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITA--PLSNPPLWPYTMYFRMPHRCHGNLQSCP 412
L +GG+NQF MM FL+D++++A + P WP TM +++ C N SCP
Sbjct: 1637 LALGGDNQFEMMIGAEFLWDNSMSANPGIHGEPFWPQTMDYQVAWDC--NEASCP 1689
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGC IK T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 84 NPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQK 139
Query: 183 GMRVIIEKFSNITDNSVVGVRAP 251
GMR + +FS I + ++G RAP
Sbjct: 140 GMRETLAEFSFIDRSHIIGTRAP 162
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQ 418
L++GG+ Q+ MM E F +D+++ L + P WP T+ ++ C GN CPTQ
Sbjct: 164 LKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---CPTQ 212
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGC IK T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 2153 NPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQK 2208
Query: 183 GMRVIIEKFSNITDNSVVGVRAP 251
GMR + +FS I + ++G RAP
Sbjct: 2209 GMRETLAEFSFIDRSHIIGTRAP 2231
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQ 418
L++GG+ Q+ MM E F +D+++ L + P WP T+ ++ C GN CPTQ
Sbjct: 2233 LKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---CPTQ 2281
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/83 (45%), Positives = 48/83 (57%)
Frame = +3
Query: 3 NPNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWGKEMA 182
NPNGC IK T+FVSH++ NY H HEI V+SIT D S T + W KE
Sbjct: 1025 NPNGCAIKGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQK 1080
Query: 183 GMRVIIEKFSNITDNSVVGVRAP 251
GMR + +FS I + ++G RAP
Sbjct: 1081 GMRETLAEFSFIDRSHIIGTRAP 1103
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 254 LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQ 418
L++GG+ Q+ MM E F +D+++ L + P WP T+ ++ C GN CPTQ
Sbjct: 1105 LKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---CPTQ 1153
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 334 IKPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPPQRIWEMVMNELDR 483
I+PP++ VL D+P +P+ PSE PNP + P PQ + E D+
Sbjct: 56 IEPPAVLEQKVLPDSPEVPKAPSEPPNPVDIQ--PTPQNNSDAAKKEDDK 103
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPP 444
PP P P P P G G+PPP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPP 319
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPPP 444
PP P P P P G G+PPP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPP 329
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 379 PPMPRKPSELPNPKGAKGVPP 441
PP P+ PS+LP P GA PP
Sbjct: 70 PPGPQGPSDLPGPSGAPPGPP 90
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 212 APGAPGKVNEVPGPAGAPGAPGP 234
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 274 APGAPGKVNEVPGPAGAPGAPGP 296
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 211 APGAPGKVNEVPGPAGAPGAPGP 233
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 211 APGAPGKVNEVPGPAGAPGAPGP 233
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 212 APGAPGKVNEVPGPAGAPGAPGP 234
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P K +E+P P GA G P P
Sbjct: 212 APGAPGKVNEVPGPAGAPGAPGP 234
>AL021480-1|CAA16326.1| 133|Caenorhabditis elegans Hypothetical
protein Y39E4A.1 protein.
Length = 133
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 323 TAPLSNPPLWPYTMYFRMPHRCHGNLQ-SCPTQRGQKGSPPPNAYG 457
TAP++N P Y + + NL + PT G PPP+A+G
Sbjct: 9 TAPVANDQKKPDDEYHNLAAMPYDNLNPNAPTVGGTPPPPPPDAHG 54
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
PP L + + +APP P P P GA PPP
Sbjct: 507 PPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPP 541
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 513 PGCAMVDSCSNILTGDQFYNFPQPPTLDRHYEQNRATL 626
P C + C G F+ P +RHY ++R ++
Sbjct: 158 PDCFVCQHCGVSFNGASFFEHNGAPLCERHYHESRGSI 195
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 376 APPMPRKPSELPNPKGAKGVPPP 444
AP P + +E+P P GA G P P
Sbjct: 211 APGAPGRVNEVPGPAGAPGAPGP 233
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 286 DGRTGILIRQHYYSTFIKPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVP 438
DG+ G + + + + PS A+ + PP P P+ P KG++G P
Sbjct: 153 DGKDGQVPQGPADGGYQEGPSDAVEACTRECPPGPPGPTGAPGDKGSRGYP 203
>AC024791-18|AAT81180.1| 438|Caenorhabditis elegans Hypothetical
protein Y47G6A.19b protein.
Length = 438
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 6 PNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 170
P D Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>AC024791-16|AAF60674.3| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.19a protein.
Length = 468
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 6 PNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 170
P D Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>AC024791-15|ABQ13056.1| 464|Caenorhabditis elegans Hypothetical
protein Y47G6A.19c protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 6 PNGCDIKATYFVSHKYTNYSAVQETHRKGHEIAVHSITHNDDERFWSNATVDDWG 170
P D Y H YT A+ + H+ E + TH++D+ F+ DD G
Sbjct: 32 PEHTDQFRQYLEKHGYTFQVAIDDLHKLLIEKEGNLSTHSNDDAFFLKRLHDDVG 86
>Z96048-1|CAB09419.1| 351|Caenorhabditis elegans Hypothetical
protein F57A10.1 protein.
Length = 351
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 156 VDDWGKEMAGMRVIIEKFSNITDNSVVGVRA 248
+DD+G+E G +++ NITD V+G+ A
Sbjct: 161 MDDFGREYLGGEILLRYERNITDIPVLGLIA 191
>Z82051-8|CAB04814.1| 349|Caenorhabditis elegans Hypothetical
protein T23D5.11 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 156 VDDWGKEMAGMRVIIEKFSNITDNSVVGVRA 248
+DD+G+E G +++ NITD V+G+ A
Sbjct: 146 MDDFGREYLGGEILLRYERNITDIPVLGLIA 176
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 373 DAPPMPRKPSELPNPKGAKGVPPP 444
D PP P P PKG +G P P
Sbjct: 201 DCPPARSGPPGPPGPKGPRGTPGP 224
>Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical
protein F42G4.3b protein.
Length = 176
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 519 CAMVDSCSNILTGDQFYNFPQPPTLDRHYEQN 614
C CS L G FYN PT + Y+ +
Sbjct: 9 CFKCGQCSKTLAGASFYNIDDKPTCEGCYQNS 40
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 519 CAMVDSCSNILTGDQFYNFPQPPTLDRHYEQN 614
C CS L G FYN PT + Y+ +
Sbjct: 436 CFKCGQCSKTLAGASFYNIDDKPTCEGCYQNS 467
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
PP + L + APP P P P A G PPP
Sbjct: 202 PPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPP 236
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 373 DAPPMPRKPSELPNPKGAKGVPPP 444
++PP+P P L NP AK PPP
Sbjct: 71 ESPPLPPPPLPLSNPP-AKPTPPP 93
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 373 DAPPMPRKPSELPNPKGAKGVPPP 444
++PP+P P L NP AK PPP
Sbjct: 293 ESPPLPPPPLPLSNPP-AKPTPPP 315
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
PP + L + APP P P P A G PPP
Sbjct: 188 PPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPP 222
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
PP + L + APP P P P A G PPP
Sbjct: 188 PPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPP 222
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 531 LPWHIRVKFVVAWVLTSVKLVHYHFPYALGGGDP 430
L + + V +VV +L S HY P A+G G P
Sbjct: 165 LAYLVWVGYVVGLILLSAVCAHYIAPQAIGSGIP 198
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 531 LPWHIRVKFVVAWVLTSVKLVHYHFPYALGGGDP 430
L + + V +VV +L S HY P A+G G P
Sbjct: 94 LAYLVWVGYVVGLILLSAVCAHYIAPQAIGSGIP 127
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 531 LPWHIRVKFVVAWVLTSVKLVHYHFPYALGGGDP 430
L + + V +VV +L S HY P A+G G P
Sbjct: 94 LAYLVWVGYVVGLILLSAVCAHYIAPQAIGSGIP 127
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 531 LPWHIRVKFVVAWVLTSVKLVHYHFPYALGGGDP 430
L + + V +VV +L S HY P A+G G P
Sbjct: 165 LAYLVWVGYVVGLILLSAVCAHYIAPQAIGSGIP 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,067,642
Number of Sequences: 27780
Number of extensions: 433583
Number of successful extensions: 1524
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -