Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30169
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 PRKPSELPNPKGAKGVPPPQRIWEMVMN 471
           P  PS+ P P G  G PP Q   +M+++
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMIS 66


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 516 GCAMVDSCSNILTGDQ 563
           G  M+DSCSN+ + D+
Sbjct: 106 GVEMIDSCSNVDSSDK 121


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 141 WSNATVDDWGKEMAGMRVIIEKFSN--ITDNSVVGVRAP 251
           WS A   D  K ++  ++ I+KF    + D+ +V    P
Sbjct: 111 WSFAEFKDCSKIVSAFKIAIDKFDRLWVLDSGLVNRTVP 149


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 396 FPWHRWGILKY 364
           F +H+WGIL Y
Sbjct: 507 FSFHQWGILVY 517



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +1

Query: 430 GVPPPQRIWEMVMNELDRREDP 495
           G PPP  +W     +L+   +P
Sbjct: 336 GTPPPPLVWRRNGADLETLNEP 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,933
Number of Sequences: 438
Number of extensions: 5730
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)