Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30169
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ...    29   2.2  
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ...    29   2.2  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   2.2  
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    29   3.0  
At1g75450.1 68414.m08764 FAD-binding domain-containing protein /...    29   3.9  
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof...    28   5.2  
At1g78420.1 68414.m09138 expressed protein                             28   5.2  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    28   6.8  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   6.8  
At5g59616.1 68418.m07473 protein kinase-related contains similar...    27   9.0  
At3g58790.1 68416.m06552 glycosyl transferase family 8 protein c...    27   9.0  
At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family...    27   9.0  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    27   9.0  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    27   9.0  
At2g27140.1 68415.m03261 heat shock family protein contains simi...    27   9.0  

>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 738

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 499 NDEFYPDVPW*ILALTFLPVINFITFLNHQLWTVI 603
           N+ + P  PW ILAL  L    F+T L + LW ++
Sbjct: 609 NNNWLPP-PWAILALVVLGFNEFMTLLRNPLWLLV 642


>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 802

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 499 NDEFYPDVPW*ILALTFLPVINFITFLNHQLWTVI 603
           N+ + P  PW ILAL  L    F+T L + LW ++
Sbjct: 673 NNNWLPP-PWAILALVVLGFNEFMTLLRNPLWLLV 706


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIWEMVMNELDRREDPSNDEFYPDVP 525
           PP    P  LP+P  ++  PPP+ +     +E  R   P +D  +P  P
Sbjct: 174 PPSHSPPRHLPSPPASEIPPPPRHLPSPPASE--RPSTPPSDSEHPSPP 220


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 379 PPMPRKPSELPNPKGAKGVP 438
           PP P  PS  P+P+GAK +P
Sbjct: 79  PPPPPSPSPSPSPQGAKLIP 98


>At1g75450.1 68414.m08764 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to GB:CAA77151
           from [Zea mays] [SP|Q9T0N8] (Plant J. 17 (6), 615-626
           (1999))
          Length = 540

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 698 EGFPKNFRVCFFKPRLAWKIKSPKKGCSVLFVMTV 594
           EG   N+R  FF PR   KI S     SVL+ + +
Sbjct: 285 EGLVNNWRSSFFSPRNPVKISSVSSNGSVLYCLEI 319


>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 517

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIWEMVMN 471
           PP+P  P  L  P      PPP+R  ++V++
Sbjct: 307 PPLPPPPPTLTQPHPKPLTPPPRRFLKLVVS 337


>At1g78420.1 68414.m09138 expressed protein
          Length = 401

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 540 SNILTGDQFYNFPQPPTL 593
           S+ +TG+ F+NFP PP L
Sbjct: 348 SSYMTGEGFHNFPPPPPL 365


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 382 PMPRKPSELPNPKGAKGVPPPQ 447
           P P+ P+  PNP      PPP+
Sbjct: 15  PKPKSPTHEPNPVAESSTPPPK 36


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 340 PPSLALHHVL*DAPPMPRKPSELPNPK-GAKGVPPP 444
           PP  A  +V    PP PR PS    P+ G +  PPP
Sbjct: 59  PPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPPP 94


>At5g59616.1 68418.m07473 protein kinase-related contains similarity
           to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 153

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 290 EEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTQRGQKGSPPP 445
           E   F     I  PL  P    YT++ + P  C G   S   +R  + + PP
Sbjct: 31  EFNMFWNRQVIADPLIPPKFTIYTIFSQSPSTCEGGKCSFQLRRTNRSTLPP 82


>At3g58790.1 68416.m06552 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; general stress protein gspA, Bacillus
           subtilis, PIR:S16423
          Length = 540

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 636 FNFPCKPWFEKTNPEI 683
           F+ P KPW E +NPE+
Sbjct: 503 FSGPAKPWLEISNPEV 518


>At3g26910.1 68416.m03367 hydroxyproline-rich glycoprotein family
           protein common family member:At2g33490 [Arabidopsis
           thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 558 DQFYN-FPQPPTLDRHYEQNRATLFRTFNFPCKP 656
           + FY   P+P T D H+ Q +A     F+ P +P
Sbjct: 405 NSFYGRLPRPSTTDTHHHQQQAAGRHAFSGPLRP 438


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 340 PPSLALHHVL*DAPPMPRKPSE-LPNPKGAKGVPPP 444
           PP   L   L   PP+PR P   LP P+     PPP
Sbjct: 70  PPRFELPPPLFPPPPLPRLPPPLLPPPEEPPREPPP 105


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 322 YSTFIKPPSLALHHVL*DAPPMPRKPSELPNPKGAKGVPPP 444
           YS  IKPP + +       PP P  PS    P+G  G PPP
Sbjct: 719 YSPPIKPPPVQV-------PPTPTTPSP---PQGGYGTPPP 749


>At2g27140.1 68415.m03261 heat shock family protein contains
           similarity to Swiss-Prot:P27397 18.0 kDa class I heat
           shock protein [Daucus carota]
          Length = 224

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 379 PPMPRKPSELPNPKGAKGVPPPQRIWE 459
           PP+P++   LP+P   + V PP+   E
Sbjct: 118 PPVPKENPNLPSPSAKEKVQPPKETRE 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,175,142
Number of Sequences: 28952
Number of extensions: 412421
Number of successful extensions: 1288
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)