Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30166
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.6  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 586 FDTPRKLNTNY*FRITGLRVYLAYHVGHY 672
           F +PR     Y FR      Y  YH+G Y
Sbjct: 64  FPSPRGALGAYPFRPMHQNSYTGYHLGSY 92


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 231 GAWPPSPPAGVCSFRARPPDRLQAYRP 151
           G W PS   GVC     P      YRP
Sbjct: 470 GPWKPSMHGGVCD-PYTPWHTFYDYRP 495


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 437 KKIFGGTYSGVERASRC 487
           K  FG TY+ +   S C
Sbjct: 26  KSFFGRTYNNISSISEC 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,984
Number of Sequences: 336
Number of extensions: 2989
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)