Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30166
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    31   0.12 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   2.6  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.5  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +3

Query: 51  EHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATL 230
           +  E+K  S  +KL              + L+ E ++L+D + A  E+++ LQE +E   
Sbjct: 297 KQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVK 356

Query: 231 HDIQNM 248
           +D +N+
Sbjct: 357 NDEKNL 362


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 526  VTSKYRVFNTATAKCNFFFNFDTPRKLNT 612
            +  KY  F  AT K NF F FD  + LNT
Sbjct: 2456 IDKKYEEFAYATLK-NFTFRFDDSKDLNT 2483


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = -2

Query: 231 GAWPPSPPAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQLEP 91
           G  PP PP GV      PP       PP AVSA  +R      Q EP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP-----PPPPAVSAGGSRYYAPAPQAEP 801


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -2

Query: 222 PPSPPAGVCSFRARPPDR-LQAYRPPFAVSARNARRTRHVLQLEPISARGCGSYPRRARE 46
           PP+P A      A+P  +   AYRPP A   +N+  +    +++ +S+     +   +R+
Sbjct: 428 PPTPHASASKLAAKPSVKPAGAYRPPGA-RGQNSTFSYRREEIDVMSSGSANKHVNSSRQ 486

Query: 45  TPSPSHTGRITDGS 4
              P  T  + DG+
Sbjct: 487 RVVPGAT-PVIDGN 499


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
           +QK +KE  +LE+DL   R K +   EE E  +  ++ +
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKEL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,317
Number of Sequences: 5004
Number of extensions: 46391
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)