Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30166
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 35 0.070
09_04_0444 - 17649685-17650524 34 0.12
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 33 0.22
09_04_0535 + 18397051-18397644 33 0.28
06_03_0219 - 18227559-18227858,18227864-18228340 31 0.87
11_04_0097 + 13448740-13450725 31 1.1
08_02_1019 - 23657175-23658047 29 2.6
04_04_1421 - 33449539-33449994 29 2.6
12_01_0240 + 1801797-1802014,1802314-1802411,1802556-1802638,180... 29 3.5
07_03_0630 - 20097672-20097772,20097983-20102012 28 6.1
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 28 6.1
12_02_1182 + 26751345-26751836 28 8.1
11_06_0610 - 25449085-25453284 28 8.1
07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318 28 8.1
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 28 8.1
01_06_1261 - 35826513-35828941,35829201-35829294 28 8.1
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503... 28 8.1
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 141 LQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
LQKE+D LE L++ R++ LLQEE++ +I N+
Sbjct: 391 LQKEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNL 426
>09_04_0444 - 17649685-17650524
Length = 279
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -2
Query: 231 GAWPPSPPAGVCSFRARPPDRLQAY-RPPFAVSARNARRTRHVLQLEPISARGCGSYPRR 55
G P PA V + A P + Y R P + H+ +A G YP+R
Sbjct: 112 GEGSPFSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQH---HMAAAAAAAAAAAGGYPQR 168
Query: 54 ARETPSPSHTGR 19
PS SH+GR
Sbjct: 169 PLALPSTSHSGR 180
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 141 LQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
LQKE+D LE L++ R++ LLQEE++ I N+
Sbjct: 290 LQKEIDDLECVLLSNRKQGGLLQEEIQKLKDKINNL 325
>09_04_0535 + 18397051-18397644
Length = 197
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 231 GAWPPSPPAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQL 97
GA+PP PPAG A Q Y PP A +A+ A + LQ+
Sbjct: 22 GAYPPPPPAGA----AAAAYAQQLYAPPAAAAAQQAAAAQQQLQM 62
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 31.1 bits (67), Expect = 0.87
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 222 PPSPPAGVCSFRARPPDRLQAYRPP-FAVSARNARRTRHVLQLEPISARGCGSYPRRARE 46
PP PP F RPP+ RP F+ A ++R +R L P S R S A
Sbjct: 100 PPPPPRLALRFPRRPPELPPRRRPSRFSAPAASSRLSR--LARAP-SGRAVFSLGLAATS 156
Query: 45 TPSPS 31
+PSPS
Sbjct: 157 SPSPS 161
>11_04_0097 + 13448740-13450725
Length = 661
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = -2
Query: 180 PPDRLQAYRPPFAVSARNARRTRHVLQLEPISARGCGSYPRRARETPSPS 31
P D QA P A + R R+ R L++EP SARG G P+RA P P+
Sbjct: 38 PADADQA-TPTDAAAERRRRKRR--LRVEPPSARG-GPAPQRAPGAPRPA 83
>08_02_1019 - 23657175-23658047
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 210 PAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQLEPISARGC--GSYPRRARETPS 37
PA + ++ A P + Y + A +H + +A G YP+R PS
Sbjct: 129 PAAISAYGASPHHQFSPY---YRTPAGYLHHQQHQMAAAAAAAAAAAAGGYPQRPLALPS 185
Query: 36 PSHTGR 19
SH+GR
Sbjct: 186 TSHSGR 191
>04_04_1421 - 33449539-33449994
Length = 151
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 225 WPPSPPAGVCSFRARPPDRLQAYRPPFAVSARNAR 121
+PP PPAG + A+PP AY P A + R R
Sbjct: 69 YPPPPPAGAYGYPAQPPPAGYAY--PAANAGRPGR 101
>12_01_0240 +
1801797-1802014,1802314-1802411,1802556-1802638,
1802730-1802856,1803168-1803231,1803347-1803444,
1803526-1803610,1803723-1803846,1804153-1804254,
1804869-1804933,1805435-1805516,1805981-1806064
Length = 409
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -2
Query: 219 PSPPAGVCSFRARPPDRLQAYRPPFAVSAR 130
P PPA V S A P QA R P + SAR
Sbjct: 10 PLPPAAVASSSAAPSTDAQAQRSPSSSSAR 39
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = +3
Query: 135 QKLQKEVDRLEDD---LVAEREKSKLLQEEMEATLHD 236
+KL+KE+DR +DD L+ ERE+ L +EE + +HD
Sbjct: 1311 RKLKKELDRNKDDPSSLMKEREE-WLKEEERKFHIHD 1346
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 222 PPSPPAGVCSFRARPPDRLQAYRPPFAVSAR 130
PP+ PA + RPP +PP AV+AR
Sbjct: 166 PPAEPAEPTAIAPRPPPAESVPKPPPAVAAR 196
>12_02_1182 + 26751345-26751836
Length = 163
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 310 P*AISCGTGKPSGLVRGARVHIFWMSWSV 224
P ++ GTG+P+G +G R +W +W+V
Sbjct: 20 PHTMAMGTGEPTGKAKGRR---WWRNWTV 45
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 315 RKYFSTILWKKLCRLIVYLEFYFSYEFF 398
R F+ I+ + +C L V + F F+Y FF
Sbjct: 334 RNVFTGIVHESICELPVLVNFSFAYNFF 361
>07_01_0947 + 7982783-7983619,7983713-7983859,7983953-7984318
Length = 449
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Frame = -2
Query: 222 PPSPPAGVCSFRARPPDRLQ--AYRPPFAVSARN---ARRTRHVLQLEPIS--ARGCGSY 64
PP PP G P D L+ R P +AR + R RH+ + P++ R G
Sbjct: 21 PPPPPCGAAQISLLPDDALREIVTRLPSNDAARTQLLSSRWRHLWRSAPLNLDLRDAGDI 80
Query: 63 PRRARETPSPSHTGRITD 10
R P P+ + D
Sbjct: 81 SRVLATHPGPARRFAVPD 98
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 129 SVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
++Q L+ + RL D++ ++EKS L+ +ME ++Q +
Sbjct: 241 NLQTLKDQAYRLRDNIAQDQEKSDALKIQMEELRTNVQGV 280
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 51 EHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQE---EME 221
+ + DK+ SL +LQK +D LED+ A E S L E ++E
Sbjct: 332 DEIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLEDEKAALIEDSSKLSERLKQVE 391
Query: 222 ATLHDIQNM 248
L IQ +
Sbjct: 392 EVLQTIQRI 400
>01_05_0342 -
21147940-21148213,21149626-21149697,21150273-21150397,
21150625-21150684,21150824-21150902,21151041-21151126,
21151224-21151544
Length = 338
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 240 GCRGAWPPSPPAGVCSFRARPPDRLQAYRPP--FAVSAR 130
GC A PP PP S A P L+ R P AVS R
Sbjct: 8 GCLAAPPPPPPLVTTSSTASPSAHLRTLRLPSGLAVSRR 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,519
Number of Sequences: 37544
Number of extensions: 337176
Number of successful extensions: 1117
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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