Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30166
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)           33   0.17 
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)                     31   0.89 
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        31   1.2  
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)                  31   1.2  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            31   1.2  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.0  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        29   3.6  
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)           29   3.6  
SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   6.2  
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)                      28   6.2  
SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)          28   8.3  
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)                  28   8.3  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     28   8.3  
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                28   8.3  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   8.3  
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)               28   8.3  

>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
          Length = 245

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +3

Query: 48  REHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEMEAT 227
           +++ E KI  L ++               + L+K+ DRL ++LV ++++   L  E+E  
Sbjct: 176 KDYFESKIEDLQERYRNAIIRGDNDLGESKLLEKQKDRLYNELVRQKKRVAFLSRELEDA 235

Query: 228 LHDI 239
           L D+
Sbjct: 236 LADL 239


>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
          Length = 611

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = -2

Query: 246 YSGCRGAWPPSPPAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQLEPISARGCGS 67
           Y+   G  PP+PP G+    +R      +     +V +     T     L P+S+    S
Sbjct: 257 YNERHGLTPPTPPEGISPIASRHSSSSSSLS---SVPSSFLASTPRAATLSPLSSSSSSS 313

Query: 66  YPRRAR--ETP--SPSHT-GRI 16
            PR +R  E P  SPS+T GR+
Sbjct: 314 SPRPSRDIELPPTSPSYTPGRV 335


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +3

Query: 51  EHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATL 230
           E ++++I  L + L             + +L+ + DRL DDL+  +++   L+ E++ T 
Sbjct: 446 EELKERIIVLEKSLKDKNDEIFGIEGKIAELEAKNDRLHDDLMDGKKRFGELEAELKYTE 505

Query: 231 HD 236
           HD
Sbjct: 506 HD 507


>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
          Length = 809

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDI 239
           Q LQKE+  LEDD   ER++ K  + E +  L  I
Sbjct: 606 QSLQKEIKSLEDDFNVERDQMKEREGEFKQKLQKI 640


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDI 239
           Q LQKE+  LEDD   ER++ K  + E +  L  I
Sbjct: 533 QSLQKEIKSLEDDFNVERDQMKEREGEFKQKLQKI 567


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 222 PPSP-PAGVCSFRARPPDRLQAYRPPFAVSARNARR 118
           PP P P G    R  PP +  + RPP  V  R A+R
Sbjct: 424 PPQPSPTGAPPQRPHPPPQQPSPRPPMGVPHRGAQR 459


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = +3

Query: 51  EHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATL 230
           + +E  +  L  +L              + L+ E+D+ ED+  A R+K K L+ E+E   
Sbjct: 658 DELEADLQKLKDELASTKRHIADLQDKHEALKDELDKTEDENDALRDKKKELEAEIEELK 717

Query: 231 HDIQNM*TRAPLTSPL 278
             +       P+  P+
Sbjct: 718 RKLAESELNIPIQQPI 733


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 132 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM*TRA 260
           + KLQK + R + ++ +E+EK +   EE+ A L  ++N  T +
Sbjct: 105 INKLQKNLLRTQMEMESEQEKHESELEELRAQLDKLENSDTES 147


>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
          Length = 277

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 36  AMASREHV--EDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQ 209
           A AS   +  EDKI  + + L                L+  +D+L +DL   R K K + 
Sbjct: 176 AAASEREIDNEDKIEFIQENLKQMVYRYEEAERKAPPLEMLLDQLVEDLELYRLKRKQVD 235

Query: 210 EEMEA 224
           EEM+A
Sbjct: 236 EEMKA 240


>SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 213 PPAGVCSFRARPPDRLQAYRPPFAVSA 133
           PP  V  +   PP  + AY PP A++A
Sbjct: 230 PPLAVTVYEPLPPLAITAYEPPLAITA 256


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHD 236
           +KLQ E+D+L + L    EKS  +Q +ME  L D
Sbjct: 732 KKLQSEIDKLSESL----EKSVAVQRKMEEELRD 761


>SB_59344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 228 AWPPSPPAGVCSFRARPPDRLQAYRPPF 145
           A+  +  +  CS R  PPD L+ Y+P F
Sbjct: 27  AYETTATSRFCSVRNDPPDELRGYKPAF 54


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 141 LQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQ 242
           +QKE + L+DDL+  + K   LQ E++    ++Q
Sbjct: 502 VQKEKEELQDDLLTAQAKFNELQAELDKAHRELQ 535


>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
          Length = 269

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 138 KLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
           KL++  D L +++V  +E  + ++EE E    DI+ +
Sbjct: 40  KLEERCDELFEEIVRMKESQREVEEEQEKLFKDIETL 76


>SB_57289| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.037)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 60  EDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEME 221
           E +I+ L +K              +++L+K+++  E+D+ A +E+ + ++ E+E
Sbjct: 187 EKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRENDIKAMKEQIQEMESELE 240


>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
          Length = 874

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 60  EDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEEME 221
           E +I+ L +K              +++L+K+++  E+D+ A +E+ + ++ E+E
Sbjct: 633 EKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPRENDIKAMKEQIQEMESELE 686


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 219 PSPPAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQLEP 91
           P PP    S R   P + Q   PP + SA N  R    LQ +P
Sbjct: 228 PPPPTFPVSSRVPTPPQGQGLVPPMSSSAGNTPRCLSPLQNDP 270


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 165 QAYRPPFAVSARNARRTRHVLQLEPISARGCGSYPRRARETPSPS---HTGRITD 10
           QAY   ++V ARN R+ ++  +L  ISA     + R+  + PS     H  RI D
Sbjct: 240 QAYS--WSVFARNLRQNKYFKRLSSISAASSRYFIRKYNDRPSGGAYPHCNRIAD 292


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 234 RGAWPPSPPAGVCSFRARPPDRLQAYRPP 148
           RG+ PP PPA + +    PP    + RPP
Sbjct: 311 RGSAPPPPPARMGTAPPPPPPSRSSQRPP 339


>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
          Length = 200

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 91  WLKLKHVPSSPSVPCRNCKRRSIGLKTIWWP 183
           WL L+++PSS  + C++C++    L  ++ P
Sbjct: 39  WLDLENLPSSNGLLCKSCQKPLAFLMQVYSP 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,185,257
Number of Sequences: 59808
Number of extensions: 341831
Number of successful extensions: 1197
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)