Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30166
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 58 5e-09
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 58 5e-09
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 58 5e-09
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 58 8e-09
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 58 8e-09
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 56 2e-08
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 46 3e-05
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 46 3e-05
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 46 3e-05
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 46 3e-05
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 46 3e-05
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 32 0.34
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 32 0.45
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 31 1.0
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 30 1.8
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 29 3.2
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 29 3.2
AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 28 7.3
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 28 7.3
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132876-14|CAD21666.1| 486|Caenorhabditis elegans Hypothetical... 27 9.6
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+L+ E+E+ + L EE
Sbjct: 186 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEE 245
Query: 216 MEATLHDIQ 242
+E T+ +IQ
Sbjct: 246 IEQTVQEIQ 254
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+L+ E+E+ + L EE
Sbjct: 186 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEE 245
Query: 216 MEATLHDIQ 242
+E T+ +IQ
Sbjct: 246 IEQTVQEIQ 254
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+L+ E+E+ + L EE
Sbjct: 186 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEE 245
Query: 216 MEATLHDIQ 242
+E T+ +IQ
Sbjct: 246 IEQTVQEIQ 254
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+LV E+E+ K + EE
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEE 273
Query: 216 MEATLHDI 239
+++T ++
Sbjct: 274 LDSTFQEL 281
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 57.6 bits (133), Expect = 8e-09
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+LV E+E+ K + EE
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEE 273
Query: 216 MEATLHDI 239
+++T ++
Sbjct: 274 LDSTFQEL 281
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLED+LV E+E+ K + EE
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEE 273
Query: 216 MEATLHDI 239
+++ L ++
Sbjct: 274 LDSNLPEL 281
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 273
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 274 LDHMVQELNSV 284
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 273
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 274 LDHMVQELNSV 284
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 214 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 273
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 274 LDHMVQELNSV 284
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 186 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 245
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 246 LDHMVQELNSV 256
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 123 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 182
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 183 LDHMVQELNSV 193
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +3
Query: 36 AMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQEE 215
A+ + E++I ++S +L SVQKLQKEVDRLE+ AE K++ LQ+E
Sbjct: 186 ALQREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDE 245
Query: 216 MEATLHDIQNM 248
++ + ++ ++
Sbjct: 246 LDHMVQELNSV 256
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 EDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAE-REKSKLL---QEEMEAT 227
+D+I L +K+ +VQKLQ + D+LE++ + + R+ K L QE +E
Sbjct: 178 DDEIEELKKKVNSESSRATLADEAVQKLQTDKDKLEEEYMNDMRDLKKALKDNQEGLEKI 237
Query: 228 LHDIQN 245
D++N
Sbjct: 238 AKDVKN 243
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = -2
Query: 222 PPSPPAGVCSFRARPPDRLQAYRPPFAVSARNARRTRHVLQLEPISARGCGSYPRRARET 43
PP+ P + FRA PP YRPP + N R EP S+R YP + +
Sbjct: 131 PPTMPRTIQGFRAPPPAATSTYRPPHGSNYDNYGR-------EPASSR--RPYPPQQPPS 181
Query: 42 PSPSHT 25
S H+
Sbjct: 182 TSAPHS 187
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -2
Query: 240 GCRGAWPPSPPAGVCSFRARPPDRLQAYRPPFAVSARNA 124
GC G PP PPA C A PP A P +A A A
Sbjct: 26 GC-GCAPPPPPACGCGGGAAPPPAYVAPAPAYAAPAGGA 63
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 39 MASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVAEREKSKLLQE 212
++S + + DK+ S+S + S +KL V LE +L E+EK++ LQE
Sbjct: 650 LSSLKTLVDKLESISLQNVSLEDVVNRLCESYKKLLVRVAELETELEYEKEKNRALQE 707
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical
protein T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEME 221
+KLQ+ V L+D +V E EK + LQE E
Sbjct: 866 EKLQETVATLKDTVVQEEEKKRQLQEGAE 894
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical
protein T18D3.4 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEME 221
+KLQ+ V L+D +V E EK + LQE E
Sbjct: 866 EKLQETVATLKDTVVQEEEKKRQLQEGAE 894
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain
2 protein.
Length = 1947
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 135 QKLQKEVDRLEDDLVAEREKSKLLQEEME 221
+KLQ+ V L+D +V E EK + LQE E
Sbjct: 866 EKLQETVATLKDTVVQEEEKKRQLQEGAE 894
>AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical
protein F27B3.5 protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 138 KLQKEVDRLEDDLVAEREKSKLLQEE 215
KL+ EV++L+D L ERE + LQEE
Sbjct: 565 KLRNEVNQLKDQLEREREIAYGLQEE 590
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 138 KLQKEVDRLEDDLVAEREKSKLLQEE 215
KL+ EV++L+D L ERE + LQEE
Sbjct: 772 KLRNEVNQLKDQLEREREIAYGLQEE 797
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 138 KLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM*TRAPLTSP 275
+L+ VD LE +VA+R + LLQ L +QN+ + SP
Sbjct: 37 RLKFRVDELEKIVVAQRNEILLLQSSTVEILRRLQNLEIQDQSRSP 82
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 150 EVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM*TRAPLTSPL 278
E DRL +L ERE+ L+E+M A L +Q T +P+
Sbjct: 51 ESDRLRQELAREREEKARLREDM-AKLSQLQQRKTAGISAAPV 92
>AL132876-14|CAD21666.1| 486|Caenorhabditis elegans Hypothetical
protein Y105E8A.17 protein.
Length = 486
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 165 EDDLVAEREKSKLLQEEMEATLHDIQNM 248
E+DL AE + +L ++E E HD+Q +
Sbjct: 224 EEDLTAELRRIELRKKEREKKAHDLQKL 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,371
Number of Sequences: 27780
Number of extensions: 273890
Number of successful extensions: 902
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -