Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30166
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 31 0.55
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 31 0.73
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 2.9
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 2.9
At4g10510.1 68417.m01723 subtilase family protein contains simil... 29 3.9
At1g21810.1 68414.m02729 expressed protein 28 5.1
At3g02930.1 68416.m00288 expressed protein ; expression support... 28 6.8
At3g56410.2 68416.m06274 expressed protein 27 8.9
At3g56410.1 68416.m06273 expressed protein 27 8.9
At1g51520.2 68414.m05799 expressed protein contains a weak hit t... 27 8.9
At1g51520.1 68414.m05798 expressed protein contains a weak hit t... 27 8.9
At1g32960.1 68414.m04059 subtilase family protein contains simil... 27 8.9
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 144 QKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQN 245
Q +D L D L+ +R K KL +EE + HD +N
Sbjct: 184 QIRIDSLIDKLIGKRHKEKLEEEEESTSTHDRRN 217
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 42 ASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVD---RLEDDLVAE-REKSKLLQ 209
A++ E K+H LS+KL ++ + E+D R E+D+ A ++ K+L+
Sbjct: 675 ANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILK 734
Query: 210 EEME 221
EE+E
Sbjct: 735 EEIE 738
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 132 VQKLQKEVDRLEDDLVA---EREKSKLLQEEMEATLHDIQN 245
VQ+L +E +L DL + E EKSK E + + LH++ +
Sbjct: 438 VQRLSEEKSKLLSDLESSKEEEEKSKKAMESLASALHEVSS 478
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 129 SVQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHDIQNM 248
+V L KEV +E ++ ERE K L+ ++E + + M
Sbjct: 565 TVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKSLDEM 604
>At4g10510.1 68417.m01723 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 765
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 526 VTSKYRVFNTATAKCNFFFNFDTPRKLNTNY*F 624
VT + VFN+ T + +F + T K+NT Y F
Sbjct: 703 VTPETLVFNSTTKRVSFKVSVSTTHKINTGYYF 735
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 132 VQKLQKEVDRLEDDLVAEREKSKLLQEEMEATLHD 236
++KLQ E D L+ +++ +E K E+EA + D
Sbjct: 353 LEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGD 387
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 51 EHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKEVDRLEDDLVA---EREKSKLLQEEME 221
E +++++ +++++ SVQ+L +E ++ +L + E EKSK E +
Sbjct: 400 EKLKNELETVNEEKTQALKKEQDATSSVQRLLEEKKKILSELESSKEEEEKSKKAMESLA 459
Query: 222 ATLHDIQN 245
+ LH++ +
Sbjct: 460 SALHEVSS 467
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +3
Query: 132 VQKLQKEVDRLE------DDLVAEREKSKLLQEEMEATLHDIQNM*TRAPLTSPLGFPV 290
++ LQKE ++L D + + E S+++ + L+ QN R+PLTSP+ P+
Sbjct: 1431 LEHLQKENEKLSLTFEQHDHIYSTTEPSEIVG--LRHALYQTQNSPLRSPLTSPIHTPI 1487
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +3
Query: 132 VQKLQKEVDRLE------DDLVAEREKSKLLQEEMEATLHDIQNM*TRAPLTSPLGFPV 290
++ LQKE ++L D + + E S+++ + L+ QN R+PLTSP+ P+
Sbjct: 1384 LEHLQKENEKLSLTFEQHDHIYSTTEPSEIVG--LRHALYQTQNSPLRSPLTSPIHTPI 1440
>At1g51520.2 68414.m05799 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 513
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 186 REKSKLLQEEMEATLHDIQNM*TRAPLTSPLG 281
+EK K+LQ+ + LH++ +P +SP G
Sbjct: 340 KEKGKILQKRQQQQLHELLERGNYSPSSSPSG 371
>At1g51520.1 68414.m05798 expressed protein contains a weak hit to
PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 414
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 186 REKSKLLQEEMEATLHDIQNM*TRAPLTSPLG 281
+EK K+LQ+ + LH++ +P +SP G
Sbjct: 340 KEKGKILQKRQQQQLHELLERGNYSPSSSPSG 371
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 526 VTSKYRVFNTATAKCNFFFNFDTPRKLNTNY*F 624
VT + VFN+ T +F T K+NT Y F
Sbjct: 715 VTPETLVFNSKTISVSFTVRVSTTHKINTGYYF 747
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,030
Number of Sequences: 28952
Number of extensions: 254300
Number of successful extensions: 714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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