Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30165
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    95   5e-21
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    94   1e-20
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   2.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   2.9  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   2.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   5.0  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   8.8  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 95.1 bits (226), Expect = 5e-21
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +3

Query: 6   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCH 185
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR    
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 186 PSS-YLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDR 362
               YL       + C +    +   G+ PSH    SGS+ RK +QSLE + ++EK  + 
Sbjct: 61  ARHIYLRKQVGVGRLC-KVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNG 119

Query: 363 GR 368
           GR
Sbjct: 120 GR 121



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 178 AAILRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGHQAVLHARLCNRWRH*SLLR 348
           AAI RHIY+R  VGV  + K++GG   R +   H    +G    +  ++        +L 
Sbjct: 58  AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGS---VQRKVVQSLEKIGVLE 114

Query: 349 KFRIVVAFLTTQGRRDLDRI 408
           K       ++ QG+RDLDRI
Sbjct: 115 KSDNGGRRISQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 93.9 bits (223), Expect = 1e-20
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +3

Query: 6   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCH 185
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR    
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 186 PSS-YLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDR 362
               YL       + C +    +   G+ PSH    SGS+ RK +QSLE + ++EK  + 
Sbjct: 61  ARHIYLRKQVGVGRLC-KVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNG 119

Query: 363 GR 368
           GR
Sbjct: 120 GR 121



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 178 AAILRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGHQAVLHARLCNRWRH*SLLR 348
           AAI RHIY+R  VGV  + K++GG   R +   H    +G    +  ++        +L 
Sbjct: 58  AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGS---VQRKVVQSLEKIGVLE 114

Query: 349 KFRIVVAFLTTQGRRDLDRI 408
           K       ++ QG+RDLDRI
Sbjct: 115 KSDNGGRRISQQGQRDLDRI 134


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 SYLHSLTCWSQDCHQDLWWAQRNGV 266
           SY+HSL  W++   Q  W ++  GV
Sbjct: 432 SYVHSLDFWARLLSQAAWLSREKGV 456


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 192  SYLHSLTCWSQDCHQDLWWAQRNG 263
            S+ + +T + Q CH++LW+ +  G
Sbjct: 1149 SFQNLVTVFCQSCHKELWYQKNAG 1172


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 186 PSSYLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSL 326
           P+S L +  C+S      +     N ++P H+C  S   + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 220 VKTVTKIFG--GRNVMELHLHISAGHQAVLHARLCNRW 327
           + T+ ++F   G +V +L+L + + H   L +R C +W
Sbjct: 272 ISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 172 VDAAILRHIYIRSPVGVKTVTKIFGGRNVMELHLHISAGHQAVLHARLCNRWRH*SLLRK 351
           +D+ I   I I   V V+  T+     +V+  +LH S  +  ++HA+        ++ +K
Sbjct: 242 IDSYIRDRIIIAGQVIVQAATEKIQDGDVILTYLHSSTVNDVLIHAK--------NVGKK 293

Query: 352 FRIVV 366
           FR+VV
Sbjct: 294 FRVVV 298


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 279 FCRSSGSIARKALQSLEALKLVEKVQDRGRISHH 380
           FC  S  +A + +  +   K+ +  Q + + SHH
Sbjct: 522 FCGMSMEMANRVISEIRTTKIYKAQQHKQKSSHH 555


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 450 LEKSPGGKKTPWSSDSVKVSSTLCGEKCDHD 358
           + K   GK  PWSSD+++    L G K D +
Sbjct: 543 IRKETEGKWLPWSSDALEYME-LAGTKQDFE 572


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 QLASKSWLRMTLIGSMCV 174
           +L SKSWL +  +G +C+
Sbjct: 359 KLLSKSWLSLEPVGQICI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,634
Number of Sequences: 5004
Number of extensions: 39866
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)