Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30165
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 105 2e-23
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 29 1.7
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 29 2.9
12_01_0457 + 3601652-3601903,3603399-3603779 28 3.8
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 3.8
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 27 6.7
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 6.7
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 8.8
03_02_0009 + 4891545-4892147,4892757-4893308 27 8.8
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 105 bits (253), Expect = 2e-23
Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSY 197
TVKDV + VK +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R +
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTR-AASIARK 66
Query: 198 LHSLTCWSQDCHQDLWWA-QRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGRI 371
++ Q ++ QRNG P HFC+SSG+I+R LQ L+ + +++ GR+
Sbjct: 67 IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRL 125
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +3
Query: 45 IVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSYLHSLTCWSQ 224
I ++A H+K V+ EH T + EL + F + H SY+ SL W Q
Sbjct: 511 ITISLAYHVKSATTVQQGEHHHRAATHLWNELDCFSSS-FKIWVTAH-KSYVESLNAWLQ 568
Query: 225 DC----HQDLWWAQRN-GVTPSH 278
C QD W +R P H
Sbjct: 569 KCVLQPAQDRWRRKRKVSFPPRH 591
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 483 STMTCCLAEAGLEKSPGGKKTPWSSDSVKVSS 388
+T++C A G + SP GK+ WS D+ + ++
Sbjct: 29 ATVSCAAAAGGGKASPRGKENVWSVDNDRAAA 60
>12_01_0457 + 3601652-3601903,3603399-3603779
Length = 210
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 199 YIRSPVGVKTVTKIFGGRNVMELHLHISAG-----HQAVLHARLCNRW 327
Y+ S ++ ++FGG L LH+ G HQ V+ + +RW
Sbjct: 100 YVPSGTTGVSIMQVFGGGTATTLMLHVYGGDLWYYHQQVVETNIYDRW 147
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 125 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 3
S +YK+ +LRYLD + S S SFN+L+ L T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 435 GGKKTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPT 322
GG K SSD V + L + +H + +Q M PT
Sbjct: 377 GGNKNRSSSDPVVIDEALDSRRLEHQQKHVEQPRMTPT 414
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 363 HDPELSQQASMPPTIAKPCVQYCLMTCRN 277
H + + + P TIA+ +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +3
Query: 3 KMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWF 164
++ ++ V D +++ + + H K TG ++ E+ ++ L PY D F
Sbjct: 224 EVAALIVNDTSENQKGRDIIVHYKDTGPRRISENHPKFMAMQYPLLFPYGEDGF 277
>03_02_0009 + 4891545-4892147,4892757-4893308
Length = 384
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 150 DPDWFYVR*CCHPSSYLHSLTCWS 221
DP WFY+ C S Y+ + W+
Sbjct: 232 DPAWFYLHITCQLSGYILGVAGWA 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,971
Number of Sequences: 37544
Number of extensions: 275713
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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