Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30165
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          70   1e-12
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                35   0.034
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                32   0.24 
SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)          31   0.42 
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)                   29   2.2  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)               28   3.9  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        28   5.2  
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     27   6.9  
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)                     27   6.9  
SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)             27   9.1  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)                  27   9.1  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 40/97 (41%), Positives = 52/97 (53%)
 Frame = +3

Query: 78  TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSYLHSLTCWSQDCHQDLWWAQR 257
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R                          + 
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR-----------------------AGRKN 38

Query: 258 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGR 368
            G  PSHF   S S+AR  L+ LE +KLVEK    GR
Sbjct: 39  RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGR 75


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 265 LHLHISAGHQAVLHARLCNRWRH*SLLRKFRIVVAFLTTQGRRDLDR 405
           LH+H   G      AR  NR++   +  + R V+  + TQGR+DLD+
Sbjct: 729 LHIHRGRGKTGAWSARRNNRYQWIQVDLRSRAVIKLIATQGRQDLDQ 775



 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 265  LHLHISAGHQAVLHARLCNRWRH*SLLRKFRIVVAFLTTQGRRDLDR 405
            LH+    G      AR  NR++   +  + R V+  + TQGR+DLD+
Sbjct: 3535 LHIRRGRGKTGAWSARRNNRYQWIQIDLRSRAVIKLIATQGRQDLDQ 3581


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 265 LHLHISAGHQAVLHARLCNRWRH*SLLRKFRIVVAFLTTQGRRDLDR 405
           LH+    G      AR  NR++   +  + R V+  + TQGR+DLD+
Sbjct: 105 LHIRRGRGKTGAWSARRNNRYQWIQIDLRSRAVIKLIATQGRQDLDQ 151



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 265  LHLHISAGHQAVLHARLCNR--WRH*SLLRKFRIVVAFLTTQGRRDLDR 405
            LH+    G      AR  NR  W    L R  RI +  + TQGR+DLD+
Sbjct: 1933 LHIRKGRGKIGAWSARQNNRRQWLQIDLRRVSRITM--IATQGRQDLDQ 1979


>SB_25552| Best HMM Match : Transket_pyr (HMM E-Value=1.6e-05)
          Length = 405

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 96  PEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSYLHSL 209
           PEH    +  RF +++  DPD+F V  C  P+S  H+L
Sbjct: 111 PEHSS-ARPERFLQMSNDDPDFFPVLNCSTPASMFHAL 147


>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
          Length = 539

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 54  TVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSYLHSLTCWSQDCH 233
           T  AHL    +    +  D+  T  + E+  +D   F++    HPS+YL+ +   S+   
Sbjct: 103 TFGAHLISVDEGSSLKVWDIKTTELYLEVG-FDSKTFHITCLMHPSTYLNKILLCSKQGS 161

Query: 234 QDLW 245
             +W
Sbjct: 162 MQIW 165


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 148
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_55521| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-24)
          Length = 567

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 169 CVDAAILRHIYIRSPVGVKTVTKIFGGRNVMELHLH-ISAGHQAVLHARLCNRWRH 333
           C+ A +L  ++ +SP+  KT    F  R ++ELH+H ++  H       L +R  H
Sbjct: 57  CLWAPVLLSVH-KSPI--KTFRDKFADREILELHVHCVNQPHGCPWEGELRHRQNH 109


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = -1

Query: 468  CLAEAGLEKSPGGKKTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPTIAKPC 307
            CLA AG   +  G     S DS   S T+      H          PP  A+PC
Sbjct: 968  CLATAGGRTADQGSTDCRSGDSASRSRTVQISAVSHGVSRHLDTRAPPISARPC 1021


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 275 TFLQVIRQYCTQGFAIVGGIEAC*ESSGSWS 367
           TF   ++  C +GF ++G      +S+G WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 258 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGRISHH 380
           +G TP HFC  +G +   A+  L+    V+ V DRG    H
Sbjct: 403 HGNTPLHFCCINGHVG-PAIVLLQCKANVDVVNDRGNTPLH 442


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 275 TFLQVIRQYCTQGFAIVGGIEAC*ESSGSWS 367
           TF   ++  C +GF ++G      +S+G WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316


>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 216 WSQDCHQDLWWAQRNGVTPSHF 281
           ++QD H    W Q NG TPS +
Sbjct: 34  YTQDLHDQFDWTQINGSTPSSY 55


>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
          Length = 2478

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 462  AEAGLEKSPGGKKTPWSSDSVKVSSTLCGEKCDHDPELSQQAS 334
            AEA  E   GG+ +P   +++ V ST  G++   + + S++ S
Sbjct: 1697 AEAEAEGGAGGQDSPAEQETITVPSTSSGKRQREEEQESERTS 1739


>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
          Length = 855

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 246 WAQRNGVTPSHFCRSSGSIARKALQSLEALK 338
           +A+RNG +   F + SGS+   A+Q ++ LK
Sbjct: 153 YAERNGPSADEFRKLSGSVQDFAVQLIDPLK 183


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 375 EKCDHDPELSQQASMPPTIAKP 310
           E C   P +S+ A+ PP+I++P
Sbjct: 302 EACHSSPSISRPATAPPSISRP 323


>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
          Length = 130

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 124 LASKSWLRMTLIGSMCVDAAI--LRHIYIRSPVG 219
           L  K W  +   GS+  D ++  LRH YIRS +G
Sbjct: 51  LVCKRWRDIAFDGSLWRDVSLGGLRHYYIRSLIG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,798
Number of Sequences: 59808
Number of extensions: 325242
Number of successful extensions: 888
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)