Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30165
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   100   5e-22
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   100   5e-22
AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in...    29   1.5  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    29   1.5  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    29   1.5  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    29   1.5  
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF045639-1|AAC02565.1|  672|Caenorhabditis elegans Hypothetical ...    24   6.6  
Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  100 bits (240), Expect = 5e-22
 Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
 Frame = +3

Query: 9   RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHP 188
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R     
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTR-AASL 61

Query: 189 SSYLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD-RG 365
           + +L+          +     +R GV P+HF  S+G+  RKA+Q LE +K VEK  D +G
Sbjct: 62  ARHLYFRPAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 366 RI 371
           RI
Sbjct: 122 RI 123



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +1

Query: 178 AAILRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH---QAVLHARLCNRWRH*S 339
           A++ RH+Y R P G+    K++GG   R V   H   SAG+   +AV       +W    
Sbjct: 59  ASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKI-KWVEKH 116

Query: 340 LLRKFRIVVAFLTTQGRRDLDRI 408
              K RI    L+ QGR+DLDRI
Sbjct: 117 PDGKGRI----LSKQGRKDLDRI 135


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  100 bits (240), Expect = 5e-22
 Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
 Frame = +3

Query: 9   RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHP 188
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R     
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTR-AASL 61

Query: 189 SSYLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD-RG 365
           + +L+          +     +R GV P+HF  S+G+  RKA+Q LE +K VEK  D +G
Sbjct: 62  ARHLYFRPAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 366 RI 371
           RI
Sbjct: 122 RI 123



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
 Frame = +1

Query: 178 AAILRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH---QAVLHARLCNRWRH*S 339
           A++ RH+Y R P G+    K++GG   R V   H   SAG+   +AV       +W    
Sbjct: 59  ASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKI-KWVEKH 116

Query: 340 LLRKFRIVVAFLTTQGRRDLDRI 408
              K RI    L+ QGR+DLDRI
Sbjct: 117 PDGKGRI----LSKQGRKDLDRI 135


>AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 8 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 480 TMTC-CLAEAGLEKSPGGK-KTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPTIAKP- 310
           T +C C +    ++SP      P  +  V+V ST C   C    +   QAS   +  +P 
Sbjct: 46  TQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSCQQQCQASPSVSQCQPQ 105

Query: 309 CVQYCLMTC 283
           C Q C   C
Sbjct: 106 CQQQCQAQC 114


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 480 TMTC-CLAEAGLEKSPGGK-KTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPTIAKP- 310
           T +C C +    ++SP      P  +  V+V ST C   C    +   QAS   +  +P 
Sbjct: 46  TQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSCQQQCQASPSVSQCQPQ 105

Query: 309 CVQYCLMTC 283
           C Q C   C
Sbjct: 106 CQQQCQAQC 114


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 480 TMTC-CLAEAGLEKSPGGK-KTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPTIAKP- 310
           T +C C +    ++SP      P  +  V+V ST C   C    +   QAS   +  +P 
Sbjct: 46  TQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSCQQQCQASPSVSQCQPQ 105

Query: 309 CVQYCLMTC 283
           C Q C   C
Sbjct: 106 CQQQCQAQC 114


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 480 TMTC-CLAEAGLEKSPGGK-KTPWSSDSVKVSSTLCGEKCDHDPELSQQASMPPTIAKP- 310
           T +C C +    ++SP      P  +  V+V ST C   C    +   QAS   +  +P 
Sbjct: 46  TQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSCQQQCQASPSVSQCQPQ 105

Query: 309 CVQYCLMTC 283
           C Q C   C
Sbjct: 106 CQQQCQAQC 114


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 441 SPGGKKTPWSSDSVKVSSTLCGEKCDHDPELSQQASM 331
           +PGG  TP  +  V V S  C EK   DP+  Q  S+
Sbjct: 155 NPGGSNTPHFATPVDVESLWCQEK---DPDAKQLPSL 188


>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 281 LQVIRQYCTQGFAIVGGIEAC*ESSGSWSHFSPHKVDETLTESL 412
           L ++R Y T    + G +E   E +  W   +P ++DE + +S+
Sbjct: 308 LDLLRHYATDDDVMAGELEILIEENRYWRIRAPAEIDEIVRKSM 351


>AF045639-1|AAC02565.1|  672|Caenorhabditis elegans Hypothetical
           protein B0212.3 protein.
          Length = 672

 Score = 23.8 bits (49), Expect(2) = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 108 DLVKTARFKELAPYDPDW 161
           +L  TA  +E+APYD D+
Sbjct: 426 ELSDTAEVEEVAPYDSDY 443



 Score = 21.8 bits (44), Expect(2) = 6.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 186 PSSYLHSLTCWSQD 227
           PSS  H LT W  D
Sbjct: 474 PSSNAHDLTMWPND 487


>Z81111-1|CAB03265.1|  349|Caenorhabditis elegans Hypothetical
           protein T01G5.1 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 180 CHPSSYLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 359
           CHP  Y    +CW+ D      +++       HF  +   I +   Q  E LK  +  QD
Sbjct: 281 CHPDMYSFLSSCWNFDPEARPTYSKCVEFFDDHFSENQIMIGK---QITEKLKSAKNYQD 337

Query: 360 RGRI 371
           + +I
Sbjct: 338 KLKI 341


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 378 GEKCDHDPELSQQASMPPTIAKPCVQYCLMTCRNVKV*LHY 256
           G   DH  E+   +++  T     V+ C M+C N ++ LH+
Sbjct: 414 GHPADHSMEMGTPSTIIFTFKGVRVKLCWMSCFNHRIQLHF 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,612
Number of Sequences: 27780
Number of extensions: 237601
Number of successful extensions: 616
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)