Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30165
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 77  NGQSQGT*AHGSCKDSSLQRAGSV 148
           NG+ +   AHG  ++ +LQ+AG V
Sbjct: 419 NGEFEVEPAHGEDREEALQKAGIV 442


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 170 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 72
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 170 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 72
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 478 NDLLLS*SWLRKKPRGEKNPLEQRF 404
           N+LL S + L +    E  PLE +F
Sbjct: 60  NELLSSYNTLERPVANESEPLEVKF 84


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 478 NDLLLS*SWLRKKPRGEKNPLEQRF 404
           N+LL S + L +    E  PLE +F
Sbjct: 60  NELLSSYNTLERPVANESEPLEVKF 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,238
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)