Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30165
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 103 9e-23
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 102 2e-22
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 100 5e-22
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 2.4
At5g47530.1 68418.m05868 auxin-responsive protein, putative simi... 28 4.2
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 28 4.2
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.4
At3g59070.1 68416.m06585 auxin-responsive protein, putative simi... 27 7.4
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 27 7.4
At4g12980.1 68417.m02027 auxin-responsive protein, putative simi... 27 9.8
At3g25290.1 68416.m03158 auxin-responsive family protein similar... 27 9.8
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 103 bits (246), Expect = 9e-23
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSY 197
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIR-AASMARK 64
Query: 198 LHSLTCWSQDCHQDLW-WAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGR 368
++ + ++ ++RNG P HFC+SSG IAR LQ LE + +VE GR
Sbjct: 65 IYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGR 122
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 102 bits (244), Expect = 2e-22
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSY 197
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIR-AASMARK 64
Query: 198 LHSLTCWSQDCHQDLW-WAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGR 368
++ + ++ ++RNG P HFC+SSG IAR LQ LE + +VE GR
Sbjct: 65 VYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGR 122
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 100 bits (240), Expect = 5e-22
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Frame = +3
Query: 18 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVR*CCHPSSY 197
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIR-AASMARK 64
Query: 198 LHSLTCWSQDCHQDLW-WAQRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDRGR 368
++ + ++ ++RNG P HFC+SSG +AR LQ L+ + +V+ GR
Sbjct: 65 VYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGR 122
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 363 HDPELSQQASMPPTIAKPCVQYCLM 289
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g47530.1 68418.m05868 auxin-responsive protein, putative similar
to auxin-induced protein AIR12 (GI:11357190)
[Arabidopsis thaliana]; similar to stromal cell derived
factor receptor 2 (GI:20381292) [Mus musculus]
Length = 395
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 150 DPDWFYVR*CCHPSSYLHSLTCWS 221
DP WFY+ C S+Y+ + W+
Sbjct: 240 DPAWFYLHVFCQSSAYIIGVAGWA 263
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 384 LCGEKCDHDPELSQQASMPPTIAKPCVQYC 295
LCG DPELS A+ P + K C++ C
Sbjct: 369 LCGCDTFGDPELSCIAAKCPALRKLCIKNC 398
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 27 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 143
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At3g59070.1 68416.m06585 auxin-responsive protein, putative similar
to auxin-induced protein AIR12 (GI:11357190)
[Arabidopsis thaliana]
Length = 466
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 114 VKTARF-KELAPYDPDWFYVR*CCHPSSYLHSL 209
V AR+ K DP WFY+ C + Y L
Sbjct: 236 VMAARYMKNYEVLDPTWFYIHVVCQTTGYFSGL 268
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 468 CLAEAGLEKSPGGKKTPWSSDSVKVSSTLCGEKCD 364
C A A P GKK + S + S +CG++CD
Sbjct: 351 CKAFAPPRSCPCGKKMVTTRCSERRSDLVCGQRCD 385
>At4g12980.1 68417.m02027 auxin-responsive protein, putative similar
to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 394
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 150 DPDWFYVR*CCHPSSYLHSLTCWS 221
DP WFY+ C S+Y+ + W+
Sbjct: 250 DPAWFYLHVSCQFSAYVIGVAGWA 273
>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 393
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 150 DPDWFYVR*CCHPSSYLHSLTCWS 221
DP WFY+ C S+Y+ + W+
Sbjct: 249 DPAWFYLHVSCQFSAYVIGVAGWA 272
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,903,605
Number of Sequences: 28952
Number of extensions: 220798
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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