Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30164
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    28   1.5  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   4.5  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    26   5.9  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 126 REDDAALWRRLISGKYVLTAGHCVKGAILDVGTPKTVRLGEYN 254
           + D + LW  L +GK+  ++       +LD  TP+TV+  E N
Sbjct: 246 KRDRSILWEELNNGKFEFSSRSEENSVLLDDFTPETVQPLEEN 288


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 182 SEHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPS 15
           S + LP+ +P P SSI L  ++   T++    +      P  +  T  S P   PS
Sbjct: 2   SSYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPS 57


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 176 HVLPADEPPPQSSIVLSSLTYSMT 105
           H++PADE P   S +L+ L YS T
Sbjct: 89  HIVPADEIPSSKSCILTIL-YSTT 111


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 183 AGHCVKGAILDVGTPKTVRLGEYNR 257
           +G C+ G + D G   T  LGEY R
Sbjct: 100 SGVCIHGELTDFGRVTTRTLGEYLR 124


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = -1

Query: 685 LPTMLILWPIAQWFSGFSSQDVSLYKRQVLRESLILLLLTVPIGRNCKYRPPASNGQSEF 506
           +P+M +  P  +      S+ +  Y  +VL +  +     V +     Y   A + +S F
Sbjct: 176 MPSMSLDLPSLEAKIAELSESLQTYPDKVLTDIELGSYQQVTLNETQTYYEDAGSNES-F 234

Query: 505 TWRVHCVICTRQAYSLINGFLKKKKKGGRDAL 410
             RVH +IC  + + + +    K  K   D L
Sbjct: 235 VARVHEIICQGREFQVQHKLTNKGNKTFEDIL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,913
Number of Sequences: 5004
Number of extensions: 64082
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)