Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30164
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 33 0.28
12_02_1023 + 25393555-25393901,25396224-25396368 32 0.50
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 31 1.1
01_06_0373 - 28841462-28842850 31 1.1
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921... 29 2.6
06_01_0831 - 6264774-6265289 29 3.5
09_04_0112 - 14757947-14758972 29 4.6
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241... 29 4.6
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 28 6.1
05_05_0054 - 21936875-21937346,21937452-21937927 28 6.1
05_03_0637 - 16465433-16466242 28 6.1
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 28 6.1
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 28 6.1
03_05_0390 - 23738892-23739392 28 8.1
01_06_1475 + 37634831-37636297 28 8.1
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30... 28 8.1
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -3
Query: 257 SVVLAETHCFRRAYIQDRS-----FHAMTGSEHVLPADEPPPQSS-IVLSSLTYSMTTSQ 96
++V E RR +++DRS F A + PA +PPP ++ +LS LT++ + +
Sbjct: 31 AIVFVEAARRRRRWLRDRSEVPPDFGAFCYRFEIAPAPQPPPPAARQLLSGLTFAASDNF 90
Query: 95 GYESMVAG 72
E VAG
Sbjct: 91 EIEGYVAG 98
>12_02_1023 + 25393555-25393901,25396224-25396368
Length = 163
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 316 WVRAIRAAR*YGHAITARVRRLYSPR-RTVFGVPTSKIAPFTQ*PAVS 176
WV A A A RRLY P RT F +P +AP PAV+
Sbjct: 8 WVGTFDTAEEAAWAYDAVARRLYGPNARTNFRIPPPPVAPLLPAPAVA 55
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -3
Query: 167 PADEPPP---QSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGL 9
P PPP S I+ SSLT + T+ ++ AGAPP +P+ + + PSGL
Sbjct: 21 PIQPPPPPGGNSMIMPSSLTTAGTSQSPPDATTAGAPPP-PAPSVGAWGGNVPSGL 75
>01_06_0373 - 28841462-28842850
Length = 462
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 176 HVLPADEPPPQSSIVLSSLTYSMT--TSQGYESMVAGAPPTIL 54
H LP E PP +S SLT+ +T ++ G +AGA P +L
Sbjct: 53 HRLPKVEVPPVASKHHESLTFEVTRLSNPGLRDFLAGASPVVL 95
>06_01_1118 -
9213785-9215051,9215811-9215992,9216075-9216611,
9216742-9217224
Length = 822
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 285 YQRAARIARTHWSR*ALRRPYLTPTISPIIFLGNTTSG*SDCKASR 422
++ A R A T R A RR + TISP + T +G DC +R
Sbjct: 679 FRSALRAAATGSHRHATRRTVIVRTISPSHYENGTWNGDGDCLRTR 724
>06_01_0831 - 6264774-6265289
Length = 171
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 63 WWCARNHRLVSLAGGHRVCEAREDDAALWRRLISGKYVLTA 185
W+C N+ V+ G HR C R D W + Y LTA
Sbjct: 122 WYC--NYVEVTATGPHRGCAQRRFDVEQWLATDASPYRLTA 160
>09_04_0112 - 14757947-14758972
Length = 341
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -3
Query: 155 PPPQSSIVLSSLTYS----MTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGLGG 3
PPP ++ V + Y M S G PP ++SP A + P P G GG
Sbjct: 151 PPPLAAAVAHQVYYPSAPHMLLSLGSSGQAQRLPPQVMSPAAAAAPP--PGGGGG 203
>07_03_0375 +
17408815-17409035,17422820-17423477,17423780-17424161,
17424236-17424550,17424727-17425118,17432479-17432508
Length = 665
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 102 GGHRVCEAREDDAALWRRLISGKY-VLTAGHCVKGAILDVGTPKTV 236
GGHRVCE RE A + S C +GA+ ++G T+
Sbjct: 31 GGHRVCERREAAPAHLSSMPSSTLGQQQVSRCKRGAVKEMGGGMTI 76
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -3
Query: 551 KLQVSSPSQQRSERIYLAGSLCNLYSASI*PNKRFFKKKEKRGPRCFAV*STRCRVS*EN 372
+ VS P + Y AGS CN ++S NK+ + E C S+ S EN
Sbjct: 493 RASVSQPVSSHLQSEYEAGSCCNTRNSS--NNKKESVRSEDEAGSCCNTGSSSNNHSEEN 550
Query: 371 DRADSR 354
D A S+
Sbjct: 551 DDAASQ 556
>05_05_0054 - 21936875-21937346,21937452-21937927
Length = 315
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 227 RRAYIQDRSFHAMTGSEHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPP 63
RR+ I D + + +H P+ PPP S + S + + S+ + +V G PP
Sbjct: 208 RRSSIHDITTVNLPDDDHGNPSPSPPP-SVLTAHSSSSAAAVSEQFGVLVDGKPP 261
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -3
Query: 203 SFHAMTGSEHVLPADEPPPQSSI----VLSSLTYSMTTSQGYESMVAGAPPTILSPTAMS 36
+FH H+L PPP + S+ T + TT+ + A AP +L A+S
Sbjct: 151 AFHHQPFHHHLLQPQPPPPPPPLYYAATASTSTVTTTTTAPPPQLAAAAPAAVLVAAAVS 210
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 251 QPTNPGRDCVSVSAGGTDCTDPLV 322
Q TNP + C +AGG T+P +
Sbjct: 204 QGTNPPKRCTKCAAGGNSATEPYI 227
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 535 DDTCSFDQLGQLEAARSSFHVTLAFCTT 618
D +CSFDQL A +S + L F TT
Sbjct: 251 DGSCSFDQLTNGSRAAASGRIVLCFSTT 278
>03_05_0390 - 23738892-23739392
Length = 166
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +3
Query: 45 RRRQNRWWCARNHRLVSLAGGHRVCEAREDDAALWRRLISGKYVLTAGH 191
RR RW R +A R EAR DA WRR + V+ H
Sbjct: 16 RRTWRRWREEAMRRRGLMASRQRRVEARRRDATHWRRGRGRRTVMEGAH 64
>01_06_1475 + 37634831-37636297
Length = 488
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 179 EHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSP 48
E + A PPP S S T S T Q A APP ++SP
Sbjct: 432 ESLAQAAAPPPSGS---SQQTSSKTNQQAGGRRSASAPPPLISP 472
>01_01_0039 +
302332-302471,302981-303509,304345-304389,304572-304718,
304834-304899,304993-305058,305171-305257
Length = 359
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 158 EPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSP 48
+PP SS +Y + + Q ES +A A P LSP
Sbjct: 43 QPPMLSSSTDQLSSYELESLQSVESQLAAAAPPTLSP 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,043,848
Number of Sequences: 37544
Number of extensions: 500954
Number of successful extensions: 1662
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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