Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30164
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 34 0.095
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.89
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 31 0.89
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 31 1.2
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_58233| Best HMM Match : Pentapeptide (HMM E-Value=1.8) 29 2.7
SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 3.6
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.2
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.2
SB_15278| Best HMM Match : Keratin_B2 (HMM E-Value=0.25) 28 6.2
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068) 28 8.3
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 28 8.3
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 34.3 bits (75), Expect = 0.095
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 1 TPPNPEGKCCGRDIAVGDKIVGGAPATIDSYPWLVVI 111
TPP P G C + G +IVGG A ++ +PW ++
Sbjct: 243 TPPPPTGSCGSKPS--GTRIVGGTEAPVNGWPWQAML 277
>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2065
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 269 GPGSSVVLAETHCFRRAYI--QDRSFHAMTGSEHVLPADEPPPQSSIVLSSLTYSMTTSQ 96
GPG V C ++ + D+ +HA+T +LP D PP+ +I+ + +++Q
Sbjct: 30 GPGGGVDHFNLSCVDQSVMVMDDKRYHAVTAMALILPVDNQPPEINILRQLIVPEGSSTQ 89
Query: 95 GYESMVAGAPP 63
+ +A P
Sbjct: 90 VTQRHIAITDP 100
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 31.1 bits (67), Expect = 0.89
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 323 KIGIEKTIPHPDYQPYHFLRKHDIGLIRLQSIAAPFFLFF*KTVY-*AICLPSTDYTVNP 499
+IGI K H DY Y +D+ LIRL A +T Y +CL D TV+
Sbjct: 286 RIGIAKIYLHADYNLYPHQYNNDVALIRLAKPAI-------RTRYVQPVCL--ADGTVSF 336
Query: 500 PSKFALTVAGWGTI 541
P + GWG +
Sbjct: 337 PPGTECWITGWGRL 350
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 31.1 bits (67), Expect = 0.89
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 149 AEAHQREVRAHCRSLRERSDLGCRHAENSASRRVQPTNPGRDCVSVSAGGTDCTDPL--V 322
AEA + E RA R+ RER D R Q + +DC+ DC D +
Sbjct: 511 AEAERAEKRADWRNWRERLDDLLDRLRRKLERARQAPHSRQDCLHQIEDAKDCQDEIEHA 570
Query: 323 KIGIEKTIPHPD 358
K + + + H D
Sbjct: 571 KPHLPQALSHAD 582
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 156 LISGKYVLTAGHCVKGAILDVGTPKTVRLGEYNRRTRAVIACPYQ 290
LIS +VLTAGHCV G + G TV +G N+ + YQ
Sbjct: 465 LISPDWVLTAGHCVHGQLDPSG--YTVVVGTLNQSALSAPILEYQ 507
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 182 CRSLRERSDLGCRHAENSASRRVQPTNPGRD--CVSVSAGGTDCTDPLVKIGI 334
CR SD CR +E+ + +P+ G D C T C DP VK+ +
Sbjct: 476 CRPSESGSDTLCRPSESGSDTLCRPSESGSDTLCRPSEVAVTPCVDP-VKVSV 527
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 182 CRSLRERSDLGCRHAENSASRRVQPTNPG-RDCVS-VSAGGTDCTDPLVKIGIE 337
CR SD CR +E+ + V P CV V T C DP VK+ E
Sbjct: 604 CRPSESGSDTPCRPSESGSDTHVDPVKVSVTPCVDPVKVSVTPCVDP-VKVPSE 656
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 182 CRSLRERSDLGCRHAENSASRRVQPTNPGRD--CVSVSAGGTDCTDPLVKIGI 334
CR SD CR +E+ + +P+ G D V T C DP VK+ +
Sbjct: 741 CRPSESGSDTLCRPSESVSDTPCRPSESGSDTHVDPVKVSVTPCVDP-VKVAV 792
>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1097
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -3
Query: 173 VLPADEPPPQSSIVLSSLTYS------MTTSQGYESMVAGAPPTILSPTAMSRP 30
VL A P Q IV +S+TYS +TT S AG+P I PTA+ P
Sbjct: 882 VLLAQMPQQQQHIVPASVTYSTPSSIVVTTPTTPTSSGAGSPTEIALPTALPMP 935
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 42 SRRRQNRWWCARNHRLVSLAGGHRVCEAREDDAALWRRLISGKYVLTAGHCV 197
+RR+Q R H V A V + A LIS K+VLTA HCV
Sbjct: 99 TRRQQCRQRIVGGHDTVKGAYPWHVLIRKGGHVACGGSLISEKWVLTAAHCV 150
>SB_58233| Best HMM Match : Pentapeptide (HMM E-Value=1.8)
Length = 516
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 191 LRERSDLGCRHAENSASRRVQPTNPGRDCVSVSAGGTDCTD 313
L E LGC +AE PG DC + G DC +
Sbjct: 299 LPELPGLGCANAELPGLDCANAEQPGLDCANAELPGLDCAN 339
>SB_12332| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 1038
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 212 QDRSFHAMTGSEHVLPADEPPPQSSIVLSSLTYSMTTSQG 93
Q S + +TG LPA PPP + L TYS +G
Sbjct: 741 QMSSPYPITGRTPSLPAPPPPPPEATALCKRTYSAKKREG 780
>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 657 LRNGFLGFL--RKTSRCTKGKCYVKA*SCCF*LSQLVETASIVPQPATVRANLLGGFTV* 484
+ N F+ ++ R+ T C V +CC L L+ ++ + T+ N+ G T+
Sbjct: 46 IANSFIVYIVARQRKLQTVTNCLVANMACCDLLISLINIPELIKEEVTLSTNMPTGGTLG 105
Query: 483 SVLGK 469
SVL K
Sbjct: 106 SVLCK 110
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 156 LISGKYVLTAGHCVKGAILDVGTPKTVRLGEYNRR 260
LI ++VLTA HCV T +RLG +NRR
Sbjct: 694 LIHPQWVLTATHCVSSR---RPTDLNIRLGAHNRR 725
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 354 G*GMVFSMPILTN-GSVQSVPPADTDTQSRPGFVGCTRRDALFSACLHPRSLLSRN 190
G G V +P+ N G QSVP TQS P V + L A +P++L R+
Sbjct: 793 GTGRVVQIPVAYNPGPTQSVPGKLESTQSSPWNVVVSNAQTLGVATDNPQTLPERS 848
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 612 YNETSCEENPENHCAIGQRINIVGR 686
YN TSCE P N+ + R+ ++ R
Sbjct: 3869 YNPTSCEALPANNVTLNPRLAVISR 3893
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 49 GDKIVGGAPATIDSYPWLVVIEY 117
G +I+ G+ A +S+PW+V I Y
Sbjct: 349 GTRIISGSDAQPNSWPWMVQINY 371
>SB_15278| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
Length = 158
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 182 CRSLRERSDLGCRHAENSASRRVQPTNPGRD--CVSVSAGGTDCTDPLVKIGI 334
CR SD CR +E+ + +P+ G D V T C DP VK+ +
Sbjct: 22 CRPSESGSDTLCRPSESVSDTLCRPSESGSDTHVDPVKVSVTPCVDP-VKVAV 73
>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
Length = 919
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 330 PILTNGSVQSVPPADTDTQSRPGFVGCTRRDALFSACLHPRSL 202
P+ T ++++ P T R GC R+A+ +AC RSL
Sbjct: 491 PVHTLAALKAQNPNTTVAFYRQDNAGCYHREAMVTACYRMRSL 533
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 13 PEGKCCGRDIAVGDKIVGGAPATIDSYPWLVVI 111
P G C + G +IVGG A ++ +PW ++
Sbjct: 207 PSGSCGSKPS--GTRIVGGTEAPVNGWPWQAML 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,614,111
Number of Sequences: 59808
Number of extensions: 551948
Number of successful extensions: 1903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -