Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30164
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    31   0.59 
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    31   0.59 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical...    29   4.2  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC024847-7|AAF60856.2|  261|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    28   7.3  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   9.6  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   9.6  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   9.6  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   9.6  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   9.6  

>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
            domain protein 1 protein.
          Length = 1346

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 395  RCRVS*ENDRADSRGEVWSSQCLS*PMGPCNPCRPLIRTRNHGPGS 258
            R R++ + +R  +RG++W+ +  S   G      PL R RNHGPG+
Sbjct: 1197 RKRLAEKRERNKTRGKIWALEGSS-AEGGAGDAAPL-RRRNHGPGT 1240


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
          Length = 1346

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 395  RCRVS*ENDRADSRGEVWSSQCLS*PMGPCNPCRPLIRTRNHGPGS 258
            R R++ + +R  +RG++W+ +  S   G      PL R RNHGPG+
Sbjct: 1197 RKRLAEKRERNKTRGKIWALEGSS-AEGGAGDAAPL-RRRNHGPGT 1240


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 146 QSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPS 15
           Q  +++  +TYS T+ Q  +       P + +P   SR  HFP+
Sbjct: 84  QPPLIIKPVTYSETSYQPIDIYSTTQTPILTTPPYPSRISHFPT 127


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 179 EHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMS 36
           EHV     P P S+   SS+T+ +    G  +++  AP +ILS   +S
Sbjct: 367 EHVTTT--PAPSSTSTKSSITWKVAHFNGNSNVIVPAPDSILSYLELS 412


>AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical
           protein Y73F8A.21 protein.
          Length = 703

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 152 PPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHF 21
           P   S   SS  Y+     GY  + AG  P +  P    +PQ+F
Sbjct: 575 PTVPSSTTSSTFYNFPPPPGYPPLNAGYTPNVNYPNLYQQPQYF 618


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 185  GSEHVLPADEPP-PQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHF 21
            GS    P  + P P SSI  +S +     S     +++ APP I++P A + P H+
Sbjct: 1058 GSTTTAPTVQAPAPSSSIPNTSTSIPKAPSA---PVLSAAPPKIVAPAAPAAPTHY 1110


>AC024847-7|AAF60856.2|  261|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.2 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 110 MTTSQGYESMVAGAPPTILSPTAMSRPQ--HFPSGLGG 3
           + T++GY SMV   P  +L  T   R Q   FP  +GG
Sbjct: 146 VVTNEGYGSMVGPEPGAVLITTGSERDQCPFFPVRIGG 183


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 179 EHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTAMSRPQHFPSGL 9
           E +L A+ PPPQ S  L     + TTS      +A A   I++ +  S P    SG+
Sbjct: 402 EEILTANGPPPQPSSPLLPALITTTTS---APTIAPASSPIINASGSSIPAASTSGI 455


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
            protein 70, isoform a protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 382  ETRHRVDQTAKHRGP 426
            ET+HR ++TAK RGP
Sbjct: 2076 ETQHREEETAKRRGP 2090


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
            protein 70, isoform b protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 382  ETRHRVDQTAKHRGP 426
            ET+HR ++TAK RGP
Sbjct: 2076 ETQHREEETAKRRGP 2090


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
            protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 382  ETRHRVDQTAKHRGP 426
            ET+HR ++TAK RGP
Sbjct: 2076 ETQHREEETAKRRGP 2090


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2257

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 382  ETRHRVDQTAKHRGP 426
            ET+HR ++TAK RGP
Sbjct: 2076 ETQHREEETAKRRGP 2090


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 382  ETRHRVDQTAKHRGP 426
            ET+HR ++TAK RGP
Sbjct: 2076 ETQHREEETAKRRGP 2090


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,316
Number of Sequences: 27780
Number of extensions: 392031
Number of successful extensions: 1202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)