Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30164
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    27   0.17 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 156 LISGKYVLTAGHCVKGAILDVGTPK-TVRLGEYN 254
           +IS +YVLTA HC    I+D  T K  + +GE++
Sbjct: 192 IISKRYVLTAAHC----IIDENTTKLAIVVGEHD 221


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 642 LGFLRKTSRCTKGK 601
           L FL   SRCT+GK
Sbjct: 12  LTFLLHPSRCTQGK 25


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 642 LGFLRKTSRCTKGK 601
           L FL   SRCT+GK
Sbjct: 12  LTFLLHPSRCTQGK 25


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -3

Query: 182  SEHVLPADEPPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTA 42
            SE +L +  PP Q + V++  T         E      PP  L+  A
Sbjct: 1193 SESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHEA 1239


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -1

Query: 541 YRPPASNGQSEFTWRVHCVICTRQAY 464
           Y P A N     +W VH  +     Y
Sbjct: 40  YGPEAGNVSCSVSWEVHDPVTNSDTY 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,657
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)