Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30164
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    32   0.31 
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    32   0.41 
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    29   2.2  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    29   3.9  
At1g19070.1 68414.m02373 F-box family protein similar to putativ...    29   3.9  
At1g54010.1 68414.m06153 myrosinase-associated protein, putative...    28   5.1  
At5g24060.1 68418.m02826 expressed protein strong similarity to ...    27   8.9  
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr...    27   8.9  

>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -3

Query: 155 PPPQSSIVLSSLTYSMTTSQGYESMVAGAPPTILSPTA 42
           PPP SS  LSSL+ S++ S    S  + APP+ LSP++
Sbjct: 70  PPPPSSSPLSSLSPSLSPSPP-SSSPSSAPPSSLSPSS 106


>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
           subunit, putative similar to component of chloroplast
           outer membrane translocon Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profiles PF01425: Amidase,
           PF00515: TPR Domain
          Length = 603

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 254 VVLAETHCFRRAYIQDRSFHAMTGSEHVLPADEPPPQSS-IVLSSLTYSMTTSQGYESMV 78
           V+LAET   R   +++  F A      +LP   PPP ++   LS LT+S++ +   +  +
Sbjct: 29  VILAETRKRRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTFSISDAFDVKDYI 88

Query: 77  AG 72
            G
Sbjct: 89  TG 90


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 505 TWRVHCVICTRQAYSLINGFLKKKKKGGRDALQSDQPDVVFPKKMIGLIVG 353
           TWR +C+ C R  Y      +K+      D+  +D+  V +P ++I  IVG
Sbjct: 323 TWRSYCIRCFRINYENDGKVVKRAHGMNDDSRITDEFVVDYPYEVITSIVG 373


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 630 EENPENHCAIGQRINIVGRGQ 692
           EE P++ C +G  +N+ G+G+
Sbjct: 95  EEKPDDACPVGDSVNVTGKGK 115


>At1g19070.1 68414.m02373 F-box family protein similar to putative
           non-LTR retroelement reverse transcriptase GI:3738337
           from [Arabidopsis thaliana] ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 83

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 120 HILDDHQPRIRVDGCGRTTNDFVSDGYVSAATLPFR 13
           H++DD    + V GCG+T  DFV      ++ LP R
Sbjct: 45  HLVDDD---LEVGGCGQTLIDFVDRVLAVSSNLPIR 77


>At1g54010.1 68414.m06153 myrosinase-associated protein, putative
           similar to myrosinase-associated protein GI:1769969 from
           [Brassica napus]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 386

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 173 VLPADEPPPQSSIVLSSLTYSMTTSQGYE 87
           V PADEP  +S +  +S T  +  S+GYE
Sbjct: 356 VYPADEPMRESWVPPTSATVQLRESRGYE 384


>At5g24060.1 68418.m02826 expressed protein strong similarity to
           unknown protein (emb|CAB61996.1); expression supported
           by MPSS
          Length = 464

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 227 ENSASRRVQPTNPGRDCVSVSAGGTDCTDPLVKIGIEKTIPHPDYQPY 370
           +N    R+ P    R  + V+  GT     L+ IG+ + I  PD  PY
Sbjct: 73  KNPGDSRLSPPETARTIIEVNKKGTLMLSGLLGIGVHENILWPDI-PY 119


>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 872

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 320 VKIGIEKTIP-HPDYQPYHFLR 382
           +  GI   +P H DY+PY+FLR
Sbjct: 60  ISSGISTKLPKHDDYKPYNFLR 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,832,059
Number of Sequences: 28952
Number of extensions: 368045
Number of successful extensions: 1091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)