Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30163
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    28   0.63 
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   7.8  

>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 EEIAYPKYEYNYSVADDHSGDNKSQQEVRDGDVVKGSYSFHEADGSI 253
           E   YPK   N ++  DHS  N+   E ++  +    YSF   D S+
Sbjct: 153 EGYTYPKLS-NDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSV 198


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = +1

Query: 265 YTADDHSGFNAVVHNTAPTAA------PTHVKAVPALQ 360
           YTA+  + +N+ +HN  P  +      PT    VPA +
Sbjct: 82  YTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYE 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,603
Number of Sequences: 5004
Number of extensions: 17834
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)