Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30163
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 28   3.4  
SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     28   4.5  
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)                     28   4.5  
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  27   7.9  

>SB_50040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 83  PVAKIVAHQAEEIAYPKYEYNYSVADDHSGDNKSQQEVRDGDVVKGSYS 229
           PV +   +Q E       +  + V DD   DN + +  R+G + KG YS
Sbjct: 107 PVGQYCVYQGEAGCPVGLDSGWVVWDDERNDNGTNRNRRNGTLPKGRYS 155


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 227 SMNPSQHHRRVPLVGTCCRRSDHQLLSSCT 138
           SM PS     V   G C  R  H LL+SCT
Sbjct: 578 SMLPSTRTTSVLYCGYCLSRDQHWLLTSCT 607


>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 143 NYSVADDHSGDNKSQQEVRDGD 208
           +Y V+DDH GD+    + R GD
Sbjct: 397 DYDVSDDHGGDDYDDSDDRGGD 418


>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
          Length = 302

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 239 LRGRSMNPSQHHRRVPLVGTCCRRSDHQLLSSCTRTWGRQSPQLG 105
           ++G + +P     ++ L GT C      LLS  ++T GR  P  G
Sbjct: 205 VQGSTQSPDHRESKLTLAGTYCVCLSTVLLSYPSKTVGRHQPLQG 249


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 250  HQTVEYTADDHSGFNAVVHNTAPTAAPTHVKAVPA 354
            H TVE+++D H   +++   T PT  P H K +PA
Sbjct: 1226 HLTVEHSSD-HGYCHSIWEKTLPTKIPAHEK-LPA 1258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,694
Number of Sequences: 59808
Number of extensions: 141694
Number of successful extensions: 414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)