Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30163
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17090.1 68418.m02002 expressed protein                             28   3.7  
At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai...    27   4.9  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    27   8.6  

>At5g17090.1 68418.m02002 expressed protein
          Length = 230

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = +2

Query: 77  SAPVAKIVAHQAEEIAYPKYEYNYS-----VADDHSGDNK----SQQEVRDGDVVKGSYS 229
           S+ V +  A + + +AY K ++N+      V ++  GD +    S+ EV DG V  G Y 
Sbjct: 6   SSDVTEKQASETDLLAYDKEKFNFKFSPNRVDEEDDGDTETEGESESEVGDGSVTYGDYK 65

Query: 230 FHE 238
             E
Sbjct: 66  VIE 68


>At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 624

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 68  SYHSAPVAKIVAHQAEEIAYPKYEYNYS 151
           SY +AP   +V+H A +IA+ +  Y YS
Sbjct: 78  SYTTAPARNVVSHHA-QIAWRRLHYKYS 104


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 403 NNSPKSLKKISGDSTEERAQP 341
           N+SP   KK+ G ST + A+P
Sbjct: 136 NDSPSDSKKVQGSSTSKSAKP 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,937,425
Number of Sequences: 28952
Number of extensions: 94107
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)