Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30162
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    28   1.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.0  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.6  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   3.4  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    26   6.0  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   6.0  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   6.0  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   7.9  

>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +3

Query: 39  TKKWDEFGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDDFKGLCGEE 218
           T++  EF K  Y Y    W    DP   E       +KG +G   W    +  K L G+E
Sbjct: 54  TRQPSEFEKSIYKYNAELWNELSDPLPAEFYF----KKGSVGEKDW---QERQKTLKGKE 106

Query: 219 NPLIKLLHKHMSLTQSRLRALDTQLLLRN 305
           +P   +  K     +S  + LD+   L++
Sbjct: 107 SPFETIFGKERKEMESN-KLLDSATHLQS 134


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 518 ENEVDNADVCTLKGRLTYQTRKSVASIGDV*TGDGSSNSRVNRGTIFQRETLTFCDLP*N 697
           ++E D+  + T         ++ VA    V T + S  S+  R +IFQ  TLT  D+  N
Sbjct: 32  DSEDDSEAIETADDNEKLFKKECVAYDAGVYTSNKSKGSQTLRWSIFQNRTLTIFDVSLN 91

Query: 698 S 700
           S
Sbjct: 92  S 92


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 352 DSYHNHHHRETDDNKNHREANYYHKTGEKNK 444
           D Y N H  +++D+ NH + +++  +  K K
Sbjct: 23  DYYSNAHSEKSEDHSNHIKVSHFDPSSYKQK 53


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 702 LEFQGKSQNVKVSR*KIVPRLTRELELPSPVHTSPILATLFLVWYVSRPFRVHTSALSTS 523
           +E   ++ + KV+    + +  R L L SP+ T      +F+ W+ S  F V   A   S
Sbjct: 252 IELGSETGSNKVAMSPSMKKFFRFLCLASPLFTMNFPMAIFMYWFPSNVFSVFQGAFLRS 311

Query: 522 FSV 514
            ++
Sbjct: 312 STI 314


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 149 EGLPRGYDLGYRYGRF*GTMRRGKSLDQ 232
           E  PRG+  G R GR  G  RRG   D+
Sbjct: 3   ESAPRGFGRGGRGGRGRGRGRRGAKRDE 30


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +1

Query: 448 GFTMHTEEDFDINVRPEVRGTPHGKRSRQCGCVYSEGTAYVPDKKECSQYWRCVNGRREF 627
           G+ + +     + V   + G P G+      C  +  T     K + SQYWRC+   R  
Sbjct: 366 GYNLDSISTSALAVAQSLLGIPPGRLHTTYACPQAVATINHVTKIQ-SQYWRCM---RPK 421

Query: 628 QFSCQPGD 651
            F   P D
Sbjct: 422 HFDANPKD 429


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 260 TVPPARTGHATPTPEWARPPSTPSDPSEGDP 352
           + P AR     P P   +PPSTP+      P
Sbjct: 24  STPKARETTEPPPPSSQQPPSTPNGKEAASP 54


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 361 HNHHHRETDDNKNHREANYYHKTGEKNKRGFTMHTEED 474
           HNHH R  +      E + +H   + +  G+ M+  E+
Sbjct: 295 HNHHRRIHNIKARLLETHIFHPNTQNHYGGYCMNQAEE 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,325
Number of Sequences: 5004
Number of extensions: 62959
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)