Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30162
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 33 0.17
09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718 32 0.51
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 31 0.89
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 31 1.2
04_04_1125 + 31085106-31085714 31 1.2
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 30 1.5
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 30 1.5
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 30 2.0
05_07_0219 - 28474661-28475146,28475979-28476644 29 2.7
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621 29 2.7
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 2.7
11_06_0610 - 25449085-25453284 29 4.7
04_03_0649 - 18402976-18403220,18403305-18404499 29 4.7
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 29 4.7
11_01_0506 - 3910532-3911335 28 6.2
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 6.2
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 28 6.2
12_02_0643 - 21461123-21461902 28 8.3
11_04_0234 + 15187065-15188241,15188316-15188494 28 8.3
10_01_0274 - 2901033-2901778,2902475-2902634 28 8.3
08_02_1454 - 27222004-27222296,27222389-27222500 28 8.3
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 28 8.3
03_05_0867 - 28381891-28383018 28 8.3
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 257 YTVPPARTGHATPTPEWARPPSTPSDP 337
Y P A++G P P WA PPS S+P
Sbjct: 452 YVAPWAQSGQYYPAPPWAAPPSVNSNP 478
>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
Length = 187
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 245 AYEPYTVPPARTGHATPTPEWARPPSTP-SDPS 340
A P+ P A T A TP+W RP + P +DPS
Sbjct: 25 ARRPHPPPAANTTGAASTPDWFRPRAPPDADPS 57
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 31.1 bits (67), Expect = 0.89
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 129 KMNWIKEKGYLGAMTWAIDMDDFKGLCGEENPLIKLLHK 245
+ N+ + GY+G M + +D++ G GE PL+ L+ +
Sbjct: 649 RQNYSSQLGYMGPMLFNVDLNVQAGYQGEHVPLVSLMSR 687
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 266 PPARTGHATPTPEWARPPSTPSDPSEGDPI 355
P A A PE A P S P DP G P+
Sbjct: 285 PRASAASARSWPEMAAPSSAPGDPGRGPPV 314
>04_04_1125 + 31085106-31085714
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +2
Query: 254 PYTVPPARTGHATPTPEW----ARPPSTPSDPS 340
P+T PPA TPTP W A PP TP+ P+
Sbjct: 62 PWTPPPATPTPPTPTP-WTPTPATPPPTPATPA 93
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 254 PYTVPPARTGHATPTPEWARPPSTPSDPS 340
P P T PTP W PP+TP+ P+
Sbjct: 47 PPPTPTPATPTTPPTP-WTPPPATPTPPT 74
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 251 EPYTVPPARTGHATPTPEWARPPSTPSDPSEGDP 352
EP P A + HATP+ + PPSTPS S P
Sbjct: 72 EPAPTPRAPSRHATPS---SSPPSTPSSASAPPP 102
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 257 YTVPPARTGHATPTPEWARPPSTPSDP-SEGDP 352
+T PP+ + P+P+++ PSTP+ P G P
Sbjct: 38 WTPPPSTASPSPPSPDFSSDPSTPATPVDNGGP 70
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 251 EPYTVPPARTGHATPTPEWARPPSTPSDPSEGDPI 355
+P PP + PTP RPPS P + P+
Sbjct: 59 KPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPV 93
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 254 PYTVPPARTGHATPTPEWARPPSTPSDPSEG 346
P T+ P T AT TP W PP T + EG
Sbjct: 181 PATMIPPPTVTATITPLWPPPPPTKKEEHEG 211
>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
Length = 283
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -1
Query: 351 GSPSDGSDGVEGGRAHSGVGVACPVRAGGTV*G 253
G+ DG+DGV GG A VGV V GG V G
Sbjct: 119 GAGGDGADGVAGGGAEGVVGVV-GVGVGGGVDG 150
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 244 SI*ALHSPACAHWTRNSYSGMGASTFNSIRPI*G*SDSYHNHHHRETDDNKNHREA 411
S+ H+ A AH + +G S R + DSYH HH +DN R A
Sbjct: 361 SVQPFHAEAAAHLRHPRHVSVGGSGSARSRRM---RDSYHGFHHLMIEDNNLGRSA 413
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 266 PPARTGHATPTPEWARPPSTPSDPS 340
PPA GH TP+P + PPS S P+
Sbjct: 630 PPAPEGH-TPSPPESTPPSEKSPPT 653
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 251 EPYTVPPARTGHATPTPEWARPPSTPSDPS 340
EP P T H P PE P P +P+
Sbjct: 447 EPPAAPSTPTSHGPPPPEEESPEEPPEEPT 476
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 48 WDEFGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDD 194
+D Y G WV ++ V K+ + G LG W ++ DD
Sbjct: 342 YDNASVASYVSVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDD 390
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 225 LIKLLHKHMSLTQSRLRALDTQLLLRNGRVHLQLH 329
LI+LLH+ +T +++ + RNG HL LH
Sbjct: 329 LIELLHEATEMTSTKIERKRRSDIERNGASHLTLH 363
>11_01_0506 - 3910532-3911335
Length = 267
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +1
Query: 418 YHKTGEKNKRGFTMH----TEEDFDINVRPEVRGTPHGKRSRQC 537
+H+ GE + G+ MH T V +R TP K + C
Sbjct: 174 FHRRGESSSSGWVMHEYEITSPPLPATVLSRIRATPRAKDKKLC 217
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 30 SGWTKKWDEFGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGA 167
+G K W K KG V YEDP + + W K + G+
Sbjct: 44 TGRPKIWIYRDKVTNEPKGDATVTYEDPHAASAAVEWFNNKDFHGS 89
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 30 SGWTKKWDEFGKCPYAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGA 167
+G K W K KG V YEDP + + W K + G+
Sbjct: 44 TGRPKIWIYRDKVTNEPKGDATVTYEDPHAASAAVEWFNNKDFHGS 89
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 269 PARTGHATPTPEWARPPSTPSDPSEGDP 352
P R TP P RPP+TP P G P
Sbjct: 214 PLRGRPRTPPPPRPRPPTTPPRPYVGCP 241
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 72 YAYKGTQWVGYEDPRSVEIKMNWIKEKGYLGAMTWAIDMDD 194
Y Y G WV ++ V+ K+ ++ + LG I DD
Sbjct: 344 YFYSGDLWVSFDSAVVVQEKVEFVAKSQLLGYFLSTISFDD 384
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 266 PPARTGHATPTPEWARPPSTPSDPSEGDP 352
PPA G+ P PE PP TP+ P G P
Sbjct: 206 PPADPGYGQPAPE-CPPPPTPA-PECGQP 232
>08_02_1454 - 27222004-27222296,27222389-27222500
Length = 134
Score = 27.9 bits (59), Expect = 8.3
Identities = 27/98 (27%), Positives = 41/98 (41%)
Frame = +2
Query: 50 GRVREMPLRIQGNSMGGLRRSS*CGD*DELDQREGLPRGYDLGYRYGRF*GTMRRGKSLD 229
G V + P+ + S CGD D D+ E + +D+ YG G M R + +
Sbjct: 16 GGVAKKPISRKKLPPQNCSESQDCGDHDLGDEVEEQLQQFDMDMTYGPCIG-MTRLRRWE 74
Query: 230 QASA*AYEPYTVPPARTGHATPTPEWARPPSTPSDPSE 343
+A+A P PP P P PS+ S P++
Sbjct: 75 RAAAMGLRP---PPRLRDLLLPPPAPHPLPSSSSSPAK 109
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 254 PYTVPPARTGHATPTPEWARPPSTPSDPSEGDPI 355
P PPART TPTP P+ P P P+
Sbjct: 130 PPPPPPARTPMPTPTPTPTPTPTRPPVPVWAAPL 163
>03_05_0867 - 28381891-28383018
Length = 375
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 260 TVPPARTGHATPTPEWAR-PPSTPSDPSEGDP 352
+ PPA A P R PP PS PS DP
Sbjct: 37 SAPPAAAAAARKLPVKRRSPPPRPSSPSSSDP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,697
Number of Sequences: 37544
Number of extensions: 461183
Number of successful extensions: 2080
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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