Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.61 
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   10.0 

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 210  ISPDTKIILRRRLKNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATSS 43
            +S +  I+LRRRL  ++P G FK+   + ST+    +  +   + AE   E A  S
Sbjct: 1616 VSDNLDIVLRRRLSQVAPYGKFKH--QILSTHLVGYEKFENTKKTAEIYLEIARIS 1669


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 331 RTLVSKYSF*YIKRCKSARYIR 266
           R +VSK SF  +KRC S   +R
Sbjct: 14  RYIVSKISFYSLKRCNSTAVVR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,518
Number of Sequences: 5004
Number of extensions: 66370
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)