Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_8390| Best HMM Match : SH2 (HMM E-Value=0.00091)                    30   2.0  
SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)           29   3.4  
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)               28   7.9  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 28   7.9  

>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 450 PIRTPFGGF*TPIKIAVMFYLQP*GIRNSTNIY*VSKKCNEH-WYQNI 310
           PIR P GG  +  K+  +  +     +++   Y  +  CNE  WYQN+
Sbjct: 158 PIRDPSGGCLSQAKVHKLLEVSTVTAKSNAYCYRETDNCNEEGWYQNL 205


>SB_8390| Best HMM Match : SH2 (HMM E-Value=0.00091)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 663 SVETKSGVTKTGIFSVSGQCLPKLILEPAFGKLPILISGPLRTTFSLLGITL 508
           +V+    + ++G F V    L KL LEP   KLP   S    T+ S+ GI+L
Sbjct: 167 TVDFFRAIDESGRFDVISDLLEKLSLEPPSNKLPTQESLDDSTSTSVSGISL 218


>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 153 GMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPY 34
           G +K + D  S    +  L KLV  L + D + A SS+PY
Sbjct: 108 GGWKTLMDAVSKFADNMSLTKLVVSLKDTDPDDAFSSVPY 147


>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
          Length = 457

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 153 GMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPY 34
           G +K + D  S    +  L KLV  L + D + A SS+PY
Sbjct: 269 GGWKTLMDAVSKFADNMSLTKLVVSLKDTDPDDAFSSVPY 308


>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 467 NGILICKSHIMRDVNVIPRRLKVVRRGPEIKIGNFPNAGSSISLGKHWPL 616
           NGI   K H+ R +N      +  RR    +  +  NA  S +LGK W L
Sbjct: 55  NGIKTQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKL 104


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 243 TWLETSLRSLQISPDTKIILRRRLKNISPPGMFKNIKD 130
           +WL++ + S ++ P+   ILR+   N    G+F+ +K+
Sbjct: 43  SWLKSDISSAEVFPENYKILRKTRDNNRGGGVFQAVKN 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,937,618
Number of Sequences: 59808
Number of extensions: 465289
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)