Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036926-1|AAH36926.1|  193|Homo sapiens TRBV21-1 protein protein.     31   4.9  
BC044233-1|AAH44233.1|  692|Homo sapiens leucine rich repeat con...    30   8.6  
AY358322-1|AAQ88688.1|  692|Homo sapiens ELLP3030 protein.             30   8.6  

>BC036926-1|AAH36926.1|  193|Homo sapiens TRBV21-1 protein protein.
          Length = 193

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 297 LNGVRVHVTLDMCTRYLNTWLETSLRSLQISPDTKIILRRRLKNISPP 154
           ++GVR H T+ +C + L         +    P T++++   LKN+ PP
Sbjct: 13  VHGVRGHSTVFLCQQQLGHHELQEQETQYFGPGTRLLVLEDLKNVFPP 60


>BC044233-1|AAH44233.1|  692|Homo sapiens leucine rich repeat
           containing 33 protein.
          Length = 692

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 159 PPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTM 25
           PPG+F N +++ + + S NQ I L    A +DR    S + +  M
Sbjct: 418 PPGLFANARNITTLDMSHNQ-ISLCPLPAASDRVGPPSCVDFRNM 461


>AY358322-1|AAQ88688.1|  692|Homo sapiens ELLP3030 protein.
          Length = 692

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 159 PPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTM 25
           PPG+F N +++ + + S NQ I L    A +DR    S + +  M
Sbjct: 418 PPGLFANARNITTLDMSHNQ-ISLCPLPAASDRVGPPSCVDFRNM 461


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,452,502
Number of Sequences: 237096
Number of extensions: 2212469
Number of successful extensions: 3775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3775
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)