Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical...    33   0.14 
CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical...    33   0.14 
AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidas...    33   0.14 
AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidas...    33   0.14 
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    28   5.3  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    27   9.2  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    27   9.2  

>CU457741-13|CAM36354.1|  608|Caenorhabditis elegans Hypothetical
           protein C42C1.11c protein.
          Length = 608

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 138 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TI 4
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI
Sbjct: 352 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTI 396


>CU457741-11|CAM36352.1|  609|Caenorhabditis elegans Hypothetical
           protein C42C1.11a protein.
          Length = 609

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 138 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TI 4
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTI 397


>AF068201-1|AAC70927.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 138 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TI 4
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTI 397


>AF068200-1|AAC72891.1|  609|Caenorhabditis elegans aminopeptidase-1
           protein.
          Length = 609

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 138 IKDVNSTNTSDNQLIKLVSRLAEADRETATSSIPYHTMTGAL*TI 4
           ++ VN     D++  KLV  L  AD + A SS+PY   +  L TI
Sbjct: 353 VRTVNDVFGPDHEYTKLVQNLGNADPDDAFSSVPYEKGSALLFTI 397


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 104 LSDVFVLLTSLIFLNIPGGLIFFNLRRKIIFVSGLIWSDRNDVSSQVFKYLVHISNVTCT 283
           + D+F   T ++ L    GL  F++++KI+  S  +   R  + S+  ++   +S  T T
Sbjct: 457 VDDIFYAGTGMLLLRNDDGLQLFDVQQKIVTASVKVSKVRYVIWSKSMEFAALLSKHTLT 516

Query: 284 L 286
           L
Sbjct: 517 L 517


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 171 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRET 55
           + ++PP     I+D  S N+  + L K  +R AEA+R T
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGT 700


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 171 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRET 55
           + ++PP     I+D  S N+  + L K  +R AEA+R T
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGT 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,005
Number of Sequences: 27780
Number of extensions: 362069
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)