Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.1  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 318 DTNVRCISLIPSIYLYY 368
           D+NV  +  +PSIYL Y
Sbjct: 33  DSNVEVVVGVPSIYLTY 49


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 194 FVSGLIWSDRNDVSSQVFKYLVHISNVTCT 283
           F  G  W    ++   V KYL+H+  +  T
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLIHLKEIEDT 117


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 518 PRRLKVVRRGPEIKIGNFPNAG 583
           P R K+++ G  IK G F  +G
Sbjct: 55  PNRQKILKDGFPIKCGTFLGSG 76


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 469 ISTRYITYSHPLW 431
           +  +Y+TY +P W
Sbjct: 515 VPVKYLTYEYPWW 527


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 469 ISTRYITYSHPLW 431
           +  +Y+TY +P W
Sbjct: 568 VPVKYLTYEYPWW 580


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 461 STNGILICKSHIMRDVNVIPRRLKVVRRGPEIKIGNFPNA 580
           +TN    C++       ++P  L  + + P IK+ N P +
Sbjct: 18  ATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,928
Number of Sequences: 438
Number of extensions: 4769
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)