Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30161
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01640.1 68416.m00095 GHMP kinase family protein contains GHM...    30   1.2  
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    30   1.2  
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    30   1.2  
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    29   2.1  
At5g10370.1 68418.m01203 helicase domain-containing protein / IB...    29   2.8  
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    28   5.0  

>At3g01640.1 68416.m00095 GHMP kinase family protein contains GHMP
           kinases putative ATP-binding protein domain,
           Pfam:PF00288
          Length = 362

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 221 DHSRLVQIQKLSYDVD*KI*VRQECLRILRMSIAQIHRIIS*LSSCPGS 75
           DHS+LV++  L++D+  ++    ECL  + + + ++ R +   S   GS
Sbjct: 268 DHSKLVELMNLNFDIRRRM-FGDECLGAMNIEMVEVARRVGAASKFTGS 315


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 434 KGVRIGYVPSTNGILICKSHIMRDVNVIPRRLKVVRRGPEIKIGNFPNAGSSISLGKHWP 613
           K V+ G+  S     I  S I+  VN+    LK  + G    +  FP AG   ++ K+W 
Sbjct: 542 KWVQYGFTKSCGHFRIRNSDIVDHVNIFSHLLKGKKTGRGGCVRIFPTAGEIWAVYKNWS 601

Query: 614 L 616
           L
Sbjct: 602 L 602


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 434 KGVRIGYVPSTNGILICKSHIMRDVNVIPRRLKVVRRGPEIKIGNFPNAGSSISLGKHWP 613
           K V+ G+  S     I  S I+  VN+    LK  + G    +  FP AG   ++ K+W 
Sbjct: 542 KWVQYGFTKSCGHFRIRNSDIVDHVNIFSHLLKGKKTGRGGCVRIFPTAGEIWAVYKNWS 601

Query: 614 L 616
           L
Sbjct: 602 L 602


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 660 VETKSGVTKTGIFSVS--GQCLPKLILEPAFGKLPILISGPLRTTFSLLGITLTSRM 496
           V+  + V K G+  ++  G CL KL LEP  GK   LI G  R      GI L + M
Sbjct: 699 VQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGK---LILGCFRHRMGKEGIVLAAVM 752


>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to RNA-dependent ATPase/helicase Cdc28p
           [Schizosaccharomyces pombe] GI:1439562; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, weak hit
           to PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1775

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 660 VETKSGVTKTGIFSVS--GQCLPKLILEPAFGKLPILISGPLRTTFSLLGITLTSRM 496
           V+  + V K G+  ++  G CL KL LEP  GK   LI G  R      GI L + M
Sbjct: 702 VQLGAVVEKNGVHELTQEGHCLVKLGLEPKLGK---LILGCFRHRMGKEGIVLAAVM 755


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 422 QKPPKGVRIGYVPSTNGILICKSHIMRDVNVIPRRLKVV 538
           ++P KG  I ++  T     C S + R  NV  RR++ V
Sbjct: 29  KRPNKGPTISHLSKTKNSENCSSSVRRRENVFQRRIEAV 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,637
Number of Sequences: 28952
Number of extensions: 322203
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)