Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30160
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.9
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.9
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 27 3.3
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 27 3.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 4.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar... 26 5.7
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 7.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 7.6
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 155 YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 63
+ RTT AHLQ R+L +A E+ IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 400 PLPQANLPSGQIGSSVFKIG 341
P+P+A LPS IG VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 511 WVQFDSASIFIGFIFAVWLPL 449
W+ F S +IF GFIFA+ LPL
Sbjct: 202 WI-FWSTTIFSGFIFALSLPL 221
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 238 ITCPSGWLSILINKPATGRVK*TTVTNSRSHEKFYQS 348
I PS + + KP+TGR+ VTNS S ++ S
Sbjct: 234 IRIPSCFQGLYALKPSTGRISYLNVTNSYSGQELIPS 270
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 420 ILFQCNLRCHKPIYLQDK*VRPFS--RLVKLFVASRVCHSCSLYP 292
I F+C RC + Y P S R + F+ VC+ CS++P
Sbjct: 313 IRFRC-FRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNECSMHP 356
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -2
Query: 576 SAEPXTSSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQS 460
SA P TSS +H L S S +L SSS+ SS S S
Sbjct: 111 SASP-TSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSS 148
>SPAC630.11 |vps55||vacuolar sorting protein Vps55
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 483 KMLALSNWTQIERLTVILTSASYLNWXLVLLNGTRIPGGIEPKSSTSNGY 632
K++ LS+ + + VIL+ A + NW +L+ +P + K STS+ +
Sbjct: 6 KIIGLSSVLAVGFMLVILSCALFKNWYPLLI--APLPNLLTKKYSTSHDF 53
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 445 TPKRGKKPNSFSMQSPLPQANLPSGQIGS 359
TP+ K ++S SPLP A++P+ GS
Sbjct: 428 TPQVSPKRPTYSRSSPLPSASVPALGDGS 456
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 507 TQIERLTVILTSASYLNWXLVLLNGTRIPGGIEPKSSTSNGYYYI 641
T IE L + S+SY W + L+N IP + + +GY ++
Sbjct: 57 TTIEGLNLPTLSSSYYKWLMDLVN---IPDDVVQNCAGLDGYVFL 98
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 467 KDESDENACTVELDPNRAPDCDPNQCVLPELVSGS 571
K +SD VELD + DP+ VLP S S
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNS 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,714
Number of Sequences: 5004
Number of extensions: 74210
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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