Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30160
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1495 + 37769982-37771496                                         32   0.65 
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    30   2.0  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   4.6  
04_04_1164 - 31413577-31414080,31414435-31414647                       29   6.0  

>01_06_1495 + 37769982-37771496
          Length = 504

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 282 CDWKGKVNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCIEKEFGFFPLLGVFNGNQ 461
           CD     + C+   K   V+  LKT E  C   K  C  G    ++   F  + +F G+ 
Sbjct: 347 CDKSYTCSRCNT--KKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHT 404

Query: 462 TA-KMNPMKMLALSNWTQ-IERLTVILTSASY 551
            A  M+ +K+   S   Q  E +  ++ SA Y
Sbjct: 405 PALPMDDIKVTGASEQPQGSEAMNTMVGSAGY 436


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 363 VRPFSRLVKLFVASRVCHSCSLYPSSR 283
           ++PF     L V  ++CH C+LYP+++
Sbjct: 202 LKPFKVCFILLVMEKMCHVCNLYPNNK 228


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 476 SDENACTVELDPNRAPDCDPNQCVLPE 556
           S EN   +++DP+    C P+ C+LP+
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLPK 274


>04_04_1164 - 31413577-31414080,31414435-31414647
          Length = 238

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 579 RSAEPXTSSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGYH*KPPKGG 430
           RSA    ++GR+    +  G+   SSS+  + SS SS     H  PP GG
Sbjct: 117 RSALERATAGRSAAAAAARGSPATSSSSSASTSSSSSSIGKRHRSPPSGG 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,823,749
Number of Sequences: 37544
Number of extensions: 477681
Number of successful extensions: 1246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)