Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30160
         (835 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   6e-07
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       49   5e-06
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                47   2e-05
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)                 30   2.0  
SB_51628| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00061)       29   4.6  
SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)                    29   4.6  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_27285| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +1

Query: 601  LNPNQVPQMVTITFNGAVNVDNIDFI*TKYSTVIVIILT--GCQIKGTFFVSHKYTTYAA 774
            L+P Q+PQM+ +TF+ A+N+    F    Y T++       GC ++ TFFVSH+YT Y  
Sbjct: 1560 LDPKQIPQMIMLTFDDAINMQVFPF----YQTLLNDTKNPNGCNVRATFFVSHEYTDYQL 1615

Query: 775  VQELHRK 795
            +  L+ +
Sbjct: 1616 LGTLYHE 1622


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +1

Query: 601 LNPNQVPQMVTITFNGAVNVDNIDFI*TKYSTVI--VIILTGCQIKGTFFVSHKYTTYAA 774
           LNP ++PQM+ +TF+ A+N      +   Y  +        GC I+ TFFVSH+YT Y  
Sbjct: 590 LNPKEIPQMIMLTFDDAINGQ----VYPVYQKIFNGKKNPNGCDIRATFFVSHEYTQYQL 645

Query: 775 VQELHRK 795
           +Q L+ +
Sbjct: 646 LQALYHE 652


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 601 LNPNQVPQMVTITFNGAVNVDNIDFI*TKYSTVIVIILT--GCQIKGTFFVSHKYTTYAA 774
           L+P   PQ++ ITF+  + V N +    +Y   +       GC I  TFF+SH YT Y  
Sbjct: 52  LSPALTPQIIMITFDDDITVINYE----QYKDAVKGFTNPNGCPITATFFISHNYTNYYL 107

Query: 775 VQELHRKG 798
            ++LH +G
Sbjct: 108 AEKLHSEG 115


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 470 DESDENACTVELDPNRAPDCDPNQCV-LPELVSGSAE 577
           D+ D+  C    +P++ PD D ++CV +PE     AE
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECVTVPERAEEVAE 446


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -1

Query: 454 PLKTPKRGKKPNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFSSLSQLFTLPFQSQ 281
           P+KTP+    P + + +SP+   + P  Q  + +F IG T +  S  S+L T   +SQ
Sbjct: 186 PVKTPQEIVTPTAHAGKSPMENGHKPDVQFSNFLFFIG-TVQDLSIKSELETSHDKSQ 242


>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
          Length = 551

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 146 TTDQRSAHLQLRRHLVASHE-KYCIPANQLITHRDTETRVEPWRSAKTG 3
           T+ +   HL+ +R L+ + E K  + +  L+T   TE  +E WR ++ G
Sbjct: 391 TSGRVGQHLKTKRGLITTPELKDLLDSGDLVTATATEKPIEEWRPSELG 439


>SB_51628| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00061)
          Length = 351

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 213 VH*VRS*TDNLPVWLAFDLDKQTCDWKGKVNNCDKLEK 326
           +H VR+  DN+      D DK +   +GK+N+ D LE+
Sbjct: 222 IHVVRNPFDNIATMTTRDKDKTSFKSQGKLNDTDALEQ 259


>SB_40486| Best HMM Match : C2 (HMM E-Value=2.9e-05)
          Length = 698

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 541 LVRITVRRSIWVQFDSASIFIGFIFAVWLPLKTPKRGKKPNSFSMQSPLPQANL 380
           L R  +  S+W +    ++ IG + A+ LPL      + PN +++ + LP+  +
Sbjct: 438 LKREAIMLSLWYESHGQNLVIGVLQAIGLPLGVIAGEEIPNPYAIITLLPERRI 491


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 255 LAFDLDKQTCDWKGKVNNCD-KLEKPRKVLPILKTDEPIC 371
           L + + K TCDW   V +CD K   P    P   T +P C
Sbjct: 818 LKWSITKTTCDWPRNV-DCDRKTPTPPSPTPPTTTPKPAC 856



 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 246  PVWLAFDLDKQTCDWKGKVNNCDK-LEKPRKVLPILKTDEPIC 371
            P  L + + K  CDW   V +CD+    P    P+  T +P C
Sbjct: 1270 PAGLKWSVKKTACDWPRYV-DCDRTTSTPPTPTPLTPTTKPAC 1311


>SB_27285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -1

Query: 835 LYGVMENSGNFMALCGVILV 776
           LYG++E+SG+FM  CGV+ V
Sbjct: 69  LYGIVEDSGSFME-CGVLTV 87


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 303 NNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCI 410
           NNCD L+KP+ +   L+TDE +     + C S  C+
Sbjct: 200 NNCDGLDKPKDLK--LRTDEDLLWILTIKCCSNKCM 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,754,669
Number of Sequences: 59808
Number of extensions: 578855
Number of successful extensions: 1631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)