Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30160
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 42 7e-04
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 42 7e-04
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 42 7e-04
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 36 0.027
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 29 3.1
AC024882-14|AAF60927.1| 360|Caenorhabditis elegans Hypothetical... 29 3.1
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr... 29 5.4
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr... 29 5.4
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 28 7.2
Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 28 7.2
Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 9.5
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF016451-11|AAB65999.1| 327|Caenorhabditis elegans Hypothetical... 28 9.5
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 613 QVPQMVTITFNGAVNVDNIDFI*TKYSTVIVIILTGCQIKGTFFVSHKYTTYAAVQELH 789
QVPQMV ++F+ + I+ + + +S I GC IKGTFFVSH++ Y LH
Sbjct: 53 QVPQMVMLSFDDPITDRIINTLKSLFSGSIRNP-NGCAIKGTFFVSHQWNNYDQSLWLH 110
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 613 QVPQMVTITFNGAVNVDNIDFI*TKYSTVIVIILTGCQIKGTFFVSHKYTTYAAVQELH 789
QVPQMV ++F+ + I+ + + +S I GC IKGTFFVSH++ Y LH
Sbjct: 2122 QVPQMVMLSFDDPITDRIINTLKSLFSGSIRNP-NGCAIKGTFFVSHQWNNYDQSLWLH 2179
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +1
Query: 613 QVPQMVTITFNGAVNVDNIDFI*TKYSTVIVIILTGCQIKGTFFVSHKYTTYAAVQELH 789
QVPQMV ++F+ + I+ + + +S I GC IKGTFFVSH++ Y LH
Sbjct: 994 QVPQMVMLSFDDPITDRIINTLKSLFSGSIRNP-NGCAIKGTFFVSHQWNNYDQSLWLH 1051
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 718 GCQIKGTFFVSHKYTTYAAVQELHRK 795
GC +K TFF+SH++T Y AV L +K
Sbjct: 1560 GCDVKATFFISHEWTNYDAVNWLVQK 1585
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 254 PDGQVICLRPDLVHLTTSRQXLRW*DGNIHRRVYRRTTDQRSAHLQLRRHLVASHEKYCI 75
PDG+ + LTT + L W + + R + R A Q +R VA+H + I
Sbjct: 261 PDGEFELMS---YRLTTQVKPLIWVEAAVERHAHSRVEYMVKAKSQFKRQSVANHVEVII 317
Query: 74 P 72
P
Sbjct: 318 P 318
>AC024882-14|AAF60927.1| 360|Caenorhabditis elegans Hypothetical
protein Y9C9A.1 protein.
Length = 360
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 354 TDEPICPEGKLACGSGDCIEKEFG 425
TD+ CPEG CG IEKE G
Sbjct: 182 TDDQWCPEGYAVCGIQSQIEKEQG 205
>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical protein
C37C3.6c protein.
Length = 1487
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 500 RQCKHFHRIH--LCSLVTIKNPQKGEKTKFFFNAISAATSQFTF-----RTNRFVRFQD 345
+QCK + H C L ++ P G+ + +++N S FT+ TNRF ++
Sbjct: 1420 QQCKAACQNHKDACQLPKVQGPCSGKHSYYYYNTASHQCETFTYGGCLGNTNRFATIEE 1478
>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical protein
C37C3.6a protein.
Length = 1558
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 500 RQCKHFHRIH--LCSLVTIKNPQKGEKTKFFFNAISAATSQFTF-----RTNRFVRFQD 345
+QCK + H C L ++ P G+ + +++N S FT+ TNRF ++
Sbjct: 1491 QQCKAACQNHKDACQLPKVQGPCSGKHSYYYYNTASHQCETFTYGGCLGNTNRFATIEE 1549
>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
C37C3.6b protein.
Length = 2167
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 500 RQCKHFHRIH--LCSLVTIKNPQKGEKTKFFFNAISAATSQFTF-----RTNRFVRFQD 345
+QCK + H C L ++ P G+ + +++N S FT+ TNRF ++
Sbjct: 1491 QQCKAACQNHKDACQLPKVQGPCSGKHSYYYYNTASHQCETFTYGGCLGNTNRFATIEE 1549
>Z82262-6|CAB05149.1| 374|Caenorhabditis elegans Hypothetical
protein C43F9.6 protein.
Length = 374
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Frame = +3
Query: 369 CPEGKLACGSG---DC---IEKEFGFFPLLGVFN-----GNQTAKMNPMKMLALSNWTQI 515
CP G L CG G C + +F +FP G+ NQ P +M+ L+N T +
Sbjct: 274 CPSGDLCCGQGIKFKCTSNADVKFEYFPKTGIPTCYFPYANQGGYEQPYQMVKLTNIT-V 332
Query: 516 ERLTVI 533
R T I
Sbjct: 333 NRETTI 338
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 474 NPMKMLALSNWTQIERLTVILTSASYLNWXLVLLNGTRIPGGIEP 608
N MK+L N I RLTV+ T Y+ ++ R+ I+P
Sbjct: 585 NGMKLLMERNADWISRLTVLFTQYHYIKSPFLVSKLVRVLSSIQP 629
>Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical
protein T05H10.5b protein.
Length = 984
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 474 NPMKMLALSNWTQIERLTVILTSASYLNWXLVLLNGTRIPGGIEP 608
N MK+L N I RLTV+ T Y+ ++ R+ I+P
Sbjct: 590 NGMKLLMERNADWISRLTVLFTQYHYIKSPFLVSKLVRVLSSIQP 634
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 474 NPMKMLALSNWTQIERLTVILTSASYLNWXLVLLNGTRIPGGIEP 608
N MK+L N I RLTV+ T Y+ ++ R+ I+P
Sbjct: 586 NGMKLLMERNADWISRLTVLFTQYHYIKSPFLVSKLVRVLSSIQP 630
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 630 NHLRYLIW-VQFHLGYVYRSAEPXTSSGRTHWLGSQSGAL 514
N +++ +W +F +R EP + T W SG+L
Sbjct: 1424 NRVKFPVWDTEFRRFVYFRDVEPLNDNNDTEWTDEDSGSL 1463
>Z99288-7|CAB63421.1| 362|Caenorhabditis elegans Hypothetical
protein ZK262.8 protein.
Length = 362
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 287 VAGLFIKIESQPDGQVICLRPDLVHLTTSRQXLRW*DGNIHRRVYRRTTDQRSAH 123
+ G+ ++E + G L DL HL + + R GNI+ RV R + SAH
Sbjct: 169 IRGMVSRLEEKIAGSHATLIQDLDHLKRAGEDHRVTIGNINTRVSRNSCLDVSAH 223
>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
protein F58H1.1b protein.
Length = 1145
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 358 TNLFVLKVNWLVAAEIALKKNLVFSPFW 441
TN + +V++ V E+ALKKNL F +W
Sbjct: 324 TNAVIQRVHYSVKRELALKKNLEF--YW 349
>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
protein F58H1.1a protein.
Length = 1143
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 358 TNLFVLKVNWLVAAEIALKKNLVFSPFW 441
TN + +V++ V E+ALKKNL F +W
Sbjct: 322 TNAVIQRVHYSVKRELALKKNLEF--YW 347
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 240 NLPVWLAFDLDKQTCDWKGKVNNC-DKLEKPR 332
N P L F+ +CDW V +C +K EKP+
Sbjct: 206 NCPANLVFNPAISSCDWPKNVMDCSEKSEKPQ 237
>AF016451-11|AAB65999.1| 327|Caenorhabditis elegans Hypothetical
protein C03A7.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 287 VAGLFIKIESQPDGQVICLRPDLVHLTTSRQXLRW*DGNIHRRVYRRTTDQRSAH 123
+ G+ ++E + G L DL HL + + R GNI+ RV R + SAH
Sbjct: 128 IRGMVSRLEEKIAGSHATLIQDLDHLKRAGEDHRVTIGNINTRVSRNSCLDVSAH 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,064
Number of Sequences: 27780
Number of extensions: 426542
Number of successful extensions: 1442
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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