Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30160
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to SP...    33   0.23 
At2g32250.2 68415.m03942 far-red impaired responsive protein, pu...    29   2.9  
At2g32250.1 68415.m03941 far-red impaired responsive protein, pu...    29   2.9  
At3g22160.1 68416.m02797 VQ motif-containing protein contains PF...    29   3.8  
At5g02370.1 68418.m00160 kinesin motor protein-related kinesin, ...    28   6.6  
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR...    28   6.6  

>At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to
           SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04129: Vps52 / Sac2 family
          Length = 707

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -2

Query: 441 PKGGKNQILFQCNLRCHKPIYLQDK*VRPFSRLVKLFVASRVCHSCSLYP 292
           P+GGK Q+ F+  L+ +  +++++  V  FS L+K FV +R     SL P
Sbjct: 566 PEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIK-FVKNRASEDSSLNP 614


>At2g32250.2 68415.m03942 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 805

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 537 LGSQS---GALFGSSSTVQAFSSDSSLQSGYH*KPP 439
           LGS++   G  + +  T Q F S SS+Q+GY+  PP
Sbjct: 698 LGSRATTLGVYYSTQQTNQGFPSISSIQNGYYGHPP 733


>At2g32250.1 68415.m03941 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 807

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 537 LGSQS---GALFGSSSTVQAFSSDSSLQSGYH*KPP 439
           LGS++   G  + +  T Q F S SS+Q+GY+  PP
Sbjct: 698 LGSRATTLGVYYSTQQTNQGFPSISSIQNGYYGHPP 733


>At3g22160.1 68416.m02797 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 192

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -2

Query: 540 WLGSQSGALFGSSSTVQAFSSDSSLQSGYH*KPPKGGKNQILFQCNLRCHKPI 382
           + G  S   FGS +T  AFS  SS        P  G   Q  +Q N + H P+
Sbjct: 83  YTGGPSAMAFGSGNTTSAFSLTSSSD------PSAGSSQQAPWQYNFQPHAPL 129


>At5g02370.1 68418.m00160 kinesin motor protein-related kinesin,
           Xenopus laevis, EMBL:XLA249840
          Length = 628

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 593 WDTCTVQQNQXPVQVGRTG*DHSQALYLGPVRQCKHFHRIHLCSL 459
           WD   V+ N+  V   + G  H + L   PV+    F   +LC +
Sbjct: 165 WDLLEVKDNEIAVWDDKDGQVHLKGLSSVPVKSMSEFQEAYLCGV 209


>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1195

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 645 VKCNSNHLRYLIWVQFHLGYVYRSAEP 565
           +KC+  ++RYL W+QF L  + ++  P
Sbjct: 631 LKCSMENVRYLYWLQFPLKKLSKAFNP 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,102
Number of Sequences: 28952
Number of extensions: 394006
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)