Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30159
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759...    84   1e-16
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996...    62   4e-10
06_01_1188 + 10219546-10219664,10220855-10223660                       30   2.2  
05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395...    30   2.2  

>07_03_1443 +
           26575172-26575181,26575709-26575805,26575900-26575985,
           26576073-26576117,26576788-26576918,26577016-26577126,
           26577215-26577472
          Length = 245

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 49/105 (46%), Positives = 64/105 (60%)
 Frame = +2

Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*N 415
           F     +ELA+ IPV+  S+GG RIIGR+ VG +      L P T    T +   +   N
Sbjct: 34  FYSAFESELADVIPVVKTSIGGTRIIGRLCVGNKNGL---LLPHT----TTDQELQHLRN 86

Query: 416 F*NPQIKTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEILA 550
               Q+   R ++ERLSALGN +ACND+VAL HPDLDK TEE++A
Sbjct: 87  CLPDQVVVQR-IDERLSALGNCVACNDHVALTHPDLDKATEELIA 130



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 254
           MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE
Sbjct: 1   MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFE 39


>01_01_1232 -
           9966448-9966708,9966818-9966928,9967142-9967176,
           9967469-9967599,9967683-9967779,9967907-9967916
          Length = 214

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 25/39 (64%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 254
           MA RV+FEN++E+GVF++LTN YC++  GG+ENF+SVFE
Sbjct: 1   MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFE 39



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +1

Query: 331 NKNGLLVPSSTTDTELQHIRNSLPE 405
           NKNGLL+P +TTD ELQH++NSLP+
Sbjct: 66  NKNGLLLPHTTTDQELQHLKNSLPD 90



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +2

Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTR 337
           F     +ELA+ +PV+  S+GG RIIGRM VG +
Sbjct: 34  FFSVFESELADVVPVVRTSIGGTRIIGRMCVGNK 67


>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 675 FGPRVYQAPSV--GCSTQWGRTKQVTFPRGL 589
           F  RV   P +   CST+W  TK V  PRG+
Sbjct: 693 FSDRVKLIPEICMSCSTRWSDTKGVRVPRGI 723


>05_05_0353 -
           24338717-24338946,24339046-24339134,24339421-24339500,
           24339768-24339902,24340231-24340461,24340540-24340634,
           24340734-24340819,24341467-24341570,24341674-24341805,
           24341883-24341999,24342170-24342229,24342779-24342820,
           24342878-24342952,24343127-24343177,24343256-24343436,
           24343548-24343594,24343710-24343775
          Length = 606

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 315 PMIRQPPTLACITGMVSANSVRTRCKNSPNLQSRQGSMCLL 193
           PM+ +  T   I G+ + NS  TRC N   +Q R  S+ ++
Sbjct: 237 PMLAKSATRIAILGVSNLNSSNTRCINVSLMQQRGDSLLIM 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,979,305
Number of Sequences: 37544
Number of extensions: 455743
Number of successful extensions: 1097
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)