Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30159
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              88   8e-18
SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)                    29   5.1  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)                 28   8.9  
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               28   8.9  

>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 53/99 (53%), Positives = 64/99 (64%)
 Frame = +2

Query: 254 TELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*NF*NPQI 433
           +EL++ IPV+  S+ GCRIIGR+ VG R      L P T     L+ +     N    Q+
Sbjct: 498 SELSDVIPVVRTSIAGCRIIGRLCVGNRHGL---LVPSTTTDQELQYIR----NALPDQV 550

Query: 434 KTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEILA 550
           K  R VEERLSALGNVIACNDYVAL H DLD +T+EILA
Sbjct: 551 KIQR-VEERLSALGNVIACNDYVALTHLDLDMETQEILA 588


>SB_18579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 662 CTRPHPSVAQRSGEEPNK*RSPGDCLGLNNFQTXNGVG 549
           CT P P+   R  E PN  +   +C GL       G+G
Sbjct: 142 CTNPSPAFGGRYCEPPNSKKQTKECKGLGTCLNILGLG 179


>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
          Length = 1307

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 724 KGHLGASEREFTLDPNIWSSGVPGPIRRLLNAVGK-NQTSNVPP 596
           +GHLG  + +     +IW  G+   I  L  + G+ N T N PP
Sbjct: 774 EGHLGIVKMKELTRGHIWWPGIDKDIEDLAKSCGQCNATRNAPP 817


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 724 KGHLGASEREFTLDPNIWSSGVPGPIRRLLNAVGK-NQTSNVPP 596
           +GHLG  + +     +IW  G+   I  L  + G  N T N PP
Sbjct: 851 EGHLGIVKMKELARGHIWWPGIDKDIEDLAKSCGPCNATRNAPP 894


>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
          Length = 877

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 724 KGHLGASEREFTLDPNIWSSGVPGPIRRLLNAVGK-NQTSNVPP 596
           +GHLG  + +     +IW  G+   I  L  + G  N T N PP
Sbjct: 634 EGHLGIVKMKELARGHIWWPGIDKDIEDLAKSCGPCNATRNAPP 677


>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 188 TEHSHFIIIFKLNANRHDFGF-SFNLFPYYVFHNMMRFFTWVAK 60
           ++H+HF     + +    +GF S  ++ Y V+H++   F W  K
Sbjct: 298 SDHAHFAYFVGIPSIEMSYGFYSHGIYGYPVYHSVHDTFYWQKK 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,268,710
Number of Sequences: 59808
Number of extensions: 530316
Number of successful extensions: 1196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)