Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30159
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...    71   6e-13
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    31   0.84 
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    31   0.84 
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    29   2.6  
AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H...    28   5.9  
AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchang...    28   5.9  
AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchang...    28   5.9  

>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 42/104 (40%), Positives = 58/104 (55%)
 Frame = +2

Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*N 415
           F   +  EL++ IPV+H S+   RI+GR+TVG R      L P       L+ +      
Sbjct: 34  FYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGL---LVPNATTDQELQHLRNSL-- 88

Query: 416 F*NPQIKTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEIL 547
              P     R V+ERLSALGNVIACND+VA+ H ++  +TE+ L
Sbjct: 89  ---PDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQAL 129



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 24/39 (61%), Positives = 33/39 (84%)
 Frame = +3

Query: 138 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 254
           MA+RV +E +N+VGVF  LTN+YCLV +GG++NFYS+ E
Sbjct: 1   MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILE 39


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 549 PDTIXRLKVIQTQTIPGGTLLVWFFPTALS-NRRMGPGTPEDQIFGSRV 692
           P     L V+ T  IP G  L+WFFP  LS N  +G  T +  + G R+
Sbjct: 17  PTLFLILPVLITTVIPFG--LIWFFPIKLSQNAEIGFDTKDTDLSGPRL 63


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 549 PDTIXRLKVIQTQTIPGGTLLVWFFPTALS-NRRMGPGTPEDQIFGSRV 692
           P     L V+ T  IP G  L+WFFP  LS N  +G  T +  + G R+
Sbjct: 17  PTLFLILPVLITTVIPFG--LIWFFPIKLSQNAEIGFDTKDTDLSGPRL 63


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 511 LKCXIVVTGYDVTEGTKPFLHAP--GGFYLGVLKISRSPADCF*CVVI 374
           L   I+   Y  +  T PFL  P  GG+ LG+LK +  P D    +V+
Sbjct: 58  LHVWIIAFDYSFSFLTAPFLLIPKLGGYILGILKYTSMPLDYLTSIVM 105


>AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H
           exchanger isoform 3 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 78  ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEL 257
           +SH    Y++   +      M  R  F+N + V VFS L   +   AIGGS    S ++L
Sbjct: 96  DSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAIGGSLLIMSKYQL 155


>AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform b protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 78  ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEL 257
           +SH    Y++   +      M  R  F+N + V VFS L   +   AIGGS    S ++L
Sbjct: 77  DSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAIGGSLLIMSKYQL 136


>AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform a protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 78  ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEL 257
           +SH    Y++   +      M  R  F+N + V VFS L   +   AIGGS    S ++L
Sbjct: 96  DSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWNTFAIGGSLLIMSKYQL 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,149
Number of Sequences: 27780
Number of extensions: 401421
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)