Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30159
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 358 STTDTELQHIRNSLPENV 411
           ST D  L  IRN +PEN+
Sbjct: 182 STLDAILDIIRNMVPENL 199


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 328 RNKNGLLVPSSTTDTELQHIRNSLPENVKFLXXXXXXXXGR 450
           RN++GL+  SST  T  +H     P + +          GR
Sbjct: 384 RNRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGR 424


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 632 VEQPTDGAWYTRGPNIRVQ 688
           +E  T+GA+ TRG  I V+
Sbjct: 785 IESATEGAYTTRGGKIPVR 803


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 699 ESSPWTRIFGPRVYQAPSVGCS 634
           E+  WTR+F   V   P   C+
Sbjct: 236 ETETWTRVFNTLVDLVPKHACA 257


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 612 VWFFPTALSNRRMGPGTPEDQIFGSRV 692
           VWF    L N  +G GTP    F +RV
Sbjct: 614 VWFAWGVLLNSGIGEGTPRS--FSARV 638


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 517 RMLKCXIVVTGYDVTEGTKPFLH 449
           R+L   I ++GY +T GT   LH
Sbjct: 400 RILDEPIELSGYRLTAGTVVLLH 422


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = -2

Query: 278 LGWSPLIQFEHAVKILRTSNRDKAVCVC*FTEHSHFIIIFKLN 150
           L W     + +    +   +RD   C    T+H +FI +  +N
Sbjct: 96  LPWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKVCSVN 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,026
Number of Sequences: 438
Number of extensions: 4686
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)