Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30159
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55620.1 68416.m06178 eukaryotic translation initiation facto...    83   1e-16
At2g39820.1 68415.m04891 eukaryotic translation initiation facto...    62   5e-10
At3g16260.1 68416.m02051 metallo-beta-lactamase family protein         29   4.2  
At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family...    28   5.5  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    28   5.5  
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ...    28   5.5  
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac...    27   9.6  
At2g13840.1 68415.m01532 PHP domain-containing protein contains ...    27   9.6  

>At3g55620.1 68416.m06178 eukaryotic translation initiation factor
           6, putative / eIF-6, putative similar to SP|O55135
           Eukaryotic translation initiation factor 6 (eIF-6) (B4
           integrin interactor) {Mus musculus}; contains Pfam
           profile PF01912: eIF-6 family
          Length = 245

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 49/105 (46%), Positives = 63/105 (60%)
 Frame = +2

Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*N 415
           F     +ELA+ IP++  S+GG RIIGR+  G +      L P T    T +   +   N
Sbjct: 34  FYSAFESELADVIPIVKTSIGGTRIIGRLCAGNKNGL---LVPHT----TTDQELQHLRN 86

Query: 416 F*NPQIKTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEILA 550
               Q+   R ++ERLSALGN IACNDYVAL H DLDK+TEEI+A
Sbjct: 87  SLPDQVVVQR-IDERLSALGNCIACNDYVALAHTDLDKETEEIIA 130



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 254
           MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFE 39


>At2g39820.1 68415.m04891 eukaryotic translation initiation factor
           6, putative / eIF-6, putative similar to SP|O55135
           Eukaryotic translation initiation factor 6 (eIF-6) (B4
           integrin interactor) {Mus musculus}; contains Pfam
           profile PF01912: eIF-6 family
          Length = 247

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 38/105 (36%), Positives = 51/105 (48%)
 Frame = +2

Query: 236 FLQRVRTELAETIPVIHASVGGCRIIGRMTVGTRTVS*FHLRPRTQNYNTLETVCRRT*N 415
           F     ++L   IP++  S+GG   IG + VG +           Q    L         
Sbjct: 36  FFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSL----- 90

Query: 416 F*NPQIKTPRGVEERLSALGNVIACNDYVAL*HPDLDKDTEEILA 550
              P     + +EE + ALGN IACNDYVAL HP L+KDTEEI++
Sbjct: 91  ---PDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIIS 132



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/41 (60%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
 Frame = +3

Query: 138 MAVRVQFENNN-EVGVFSKLTNTYCLV-AIGGSENFYSVFE 254
           MA R+Q++NNN E+GVFSKLTN YCLV A   S NF++ +E
Sbjct: 1   MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYE 41



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 331 NKNGLLVPSSTTDTELQHIRNSLPENV 411
           NKNGLL+  + TD ELQH+R+SLP+ V
Sbjct: 68  NKNGLLLSHTITDQELQHLRDSLPDEV 94


>At3g16260.1 68416.m02051 metallo-beta-lactamase family protein 
          Length = 937

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 700 REFTLDPNIWSSGVPGPIRRLLNAVGKNQTSNVPPGIVW 584
           R F+L P I++S  P P RR     G  ++   PP   W
Sbjct: 23  RPFSLYPPIFASSSPAPSRRPPRTAGYRRSGPSPPRRKW 61


>At5g34850.1 68418.m04090 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 475

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 340 RSCSYGHSTDDSAASNTRMYHWD 272
           R  SYGHST D       +YHW+
Sbjct: 409 REASYGHSTLDIKNRTHAIYHWN 431


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 712 GASEREFTLDPNIWSSGVPGPIRRLLNAVGKNQTSNV 602
           G SE EFTLD N W   V      L+N V K +  NV
Sbjct: 420 GISEDEFTLDTNFWREQV-NQYWELMN-VNKTEVRNV 454


>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
           WD-40 repeats (PF0400);similar to guanine
           nucleotide-binding protein beta subunit GPBA (SP:P36408)
           [Dictyostelium discoideum (Slime mold)]; similar to
           katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
           [Homo sapiens]
          Length = 418

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -2

Query: 263 LIQFEHAVKILRTSNRDKAVCVC*FTEHSHFIIIFKLNANRHDFGFSFNLFPYYVFHNMM 84
           L Q+++ V ILR S+R+K        +  H  ++ K   N +DF F+  L    + H  +
Sbjct: 54  LKQYDNFVNILRPSSREK-------LDKEHGQVVEK-GKNFYDFQFNTRLVTSTIVHFQL 105

Query: 83  RFFTWVAKNTSV 48
           R   W      V
Sbjct: 106 RNLVWATSKHDV 117


>At5g18560.1 68418.m02194 AP2 domain-containing transcription
           factor, putative AP2/EREBP-like transcription factor
           LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
          Length = 348

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 563 TFESYSDPNNPRGNVTCLVLPHCVEQPTD 649
           T E ++  NN  G + C+V  HC++ P +
Sbjct: 221 TSEEHNKSNNNSGYLDCIVPNHCLKPPPE 249


>At2g13840.1 68415.m01532 PHP domain-containing protein contains
           Pfam PF02231: PHP domain N-terminal region and Pfam
           PF02811: PHP domain C-terminal region; identical to
           Protein trpH. (Swiss-Prot:O54453) [Salmonella
           typhimurium]
          Length = 434

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 156 FENNNEVGVFSKLTNTYCLVAIGGSE 233
           + ++ ++ VFS+L +TY L+ +GGS+
Sbjct: 290 YRSDGKLEVFSELADTYNLLKLGGSD 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,655
Number of Sequences: 28952
Number of extensions: 366102
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)