Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.0  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 321  IEMQEKMAEEEKRRIEDQRALLG 389
            +E ++K AEE KR+ + Q++LLG
Sbjct: 1073 LEEEKKQAEEAKRKAK-QKSLLG 1094


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 321  IEMQEKMAEEEKRRIEDQRALLG 389
            +E ++K AEE KR+ + Q++LLG
Sbjct: 1073 LEEEKKQAEEAKRKAK-QKSLLG 1094


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 321  IEMQEKMAEEEKRRIEDQRALLG 389
            +E ++K AEE KR+ + Q++LLG
Sbjct: 1073 LEEEKKQAEEAKRKAK-QKSLLG 1094


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 321  IEMQEKMAEEEKRRIEDQRALLG 389
            +E ++K AEE KR+ + Q++LLG
Sbjct: 1073 LEEEKKQAEEAKRKAK-QKSLLG 1094


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 516 NSQTAPGRPPACPP 475
           NS T P RP AC P
Sbjct: 133 NSLTGPVRPAACTP 146


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 592 PVRVLHQTCTILKKLTSVYI 651
           P+RVLHQ     KK T+  +
Sbjct: 190 PMRVLHQCPVCHKKFTNALV 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,865
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)