Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    42   1e-04
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    27   3.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.9  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.5  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   8.6  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   8.6  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   8.6  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 258 WLELLRKYFNE-DVITIVGSPSIEMQEKMAEEEKRRIEDQRALLG 389
           WL+LL+K+F E + +T++  PS EM E + +E   ++  +R LLG
Sbjct: 436 WLKLLKKWFVENNSVTVIALPSFEMAENIKKENAEQLNKRRCLLG 480


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 255 YWLELL---RKYFNEDVITIVGSPSIEMQEKMAEEEKRRI 365
           YW ELL   RK+  +    + G  S  +Q+K A E+K  I
Sbjct: 452 YWKELLEEGRKFERQLCRNVFGRSSFYVQQKTAAEKKEHI 491


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 59  PSTWSVWRDYCRNNSGRARPALRLSRIRPSH 151
           PS  + W+DY  NNS          + RPSH
Sbjct: 363 PSMRNDWKDYLDNNSKEILDQFGFLQKRPSH 393


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 219 KRSSRFNGRIVRYWLELLRKYFNEDVITIVGSPSIEMQEKMAEEEKRRIEDQ 374
           KR +  N + VR+ + +L ++F    + ++ S S    + +A E +   ED+
Sbjct: 684 KRQNSLNLKPVRFRISVLAEFFGSQAVFVLESGSSTTFDHLATEFQLIFEDK 735


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +1

Query: 574 TFDIRRPVRV--LHQTCTILKKLTSVYIKPFIMGYVISLTLA 693
           T+++R   R+  LH    I+K++TS++I+P   G  + +T+A
Sbjct: 79  TYEMRIHKRLIDLHSPSEIVKQITSIHIEP---GVEVEVTIA 117


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 177 LTE*TGFHISY-ESSKRSSRFNGRIVRYWLELLRKYF 284
           + E  GFH+ Y E+  R +  N + VR WL+   ++F
Sbjct: 181 MLEEAGFHVEYVENISRPTLLN-KDVREWLDTFAQHF 216


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 391 SPNKARWSSILRFSSSAIFSCISMLGEPTIVITSSLKYLRKSSNQYLTI 245
           SP+K  WSSILR  S          G     +T+  K+  ++++Q+  I
Sbjct: 245 SPSKGSWSSILRRPSLTYSPKRQSTGLHRRSLTNYFKFPHRNAHQHNAI 293


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 430 FSLSCLAFSARPFSPNKARWSSILRFS 350
           F   C+A+ A  ++ NK++ S  LR+S
Sbjct: 50  FKKECVAYDAGVYTSNKSKGSQTLRWS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,203
Number of Sequences: 5004
Number of extensions: 59811
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)