Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    28   9.0  
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470...    28   9.0  

>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 288 EDVITIVGSPSIEMQ-EKMAEEEKRRIEDQRAL 383
           E+V+ +V     E + +KM EEEK+R++++  L
Sbjct: 4   EEVVVVVDEEESERRRQKMIEEEKKRLDEEMEL 36


>03_01_0642 -
           4702726-4703052,4703127-4703193,4703280-4703360,
           4703582-4703718,4703936-4704143,4704664-4704891,
           4705310-4705450,4705538-4705794
          Length = 481

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 STESLRCSGMRWPDAA*PQGWPRSPGVVSAV-VSPNGPCRWARR 50
           S E L+C+      AA P G PR+   + AV  +  G  RW RR
Sbjct: 5   SPEELKCAANGGCAAASPGGTPRAGHYLPAVPAAVEGELRWLRR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,912,382
Number of Sequences: 37544
Number of extensions: 435628
Number of successful extensions: 1427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)