Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)       46   4e-05
SB_12907| Best HMM Match : DUF640 (HMM E-Value=7.4)                    32   0.56 
SB_53902| Best HMM Match : PSI (HMM E-Value=8.7)                       29   5.2  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    28   6.9  

>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
          Length = 456

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 252 RYWLELLRKYF-NEDVITIVGSPSIEMQEKMAEEEKRRIEDQRALLGE 392
           +YW E L+ YF    ++ ++G PS ++ E MA  EK R+  QR  LGE
Sbjct: 291 QYWKEFLKSYFVKAPLVMVIGEPSKQLMEDMAAAEKARVAAQREALGE 338



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/102 (20%), Positives = 40/102 (39%)
 Frame = +1

Query: 7   AKEEARRCLEHVRSGGEPIDMVXXXXXXXXXXXXSAASLEAKPHQAIAFRCIGDSLYSQN 186
           A+++    +  +  G E +DM             +   +E  PH   A   I D LYS +
Sbjct: 209 ARQKIIEVISSIADGSEALDMTRMATVIHRVILDTKDKIENDPHDTFADLVIYDFLYSHS 268

Query: 187 EQDFISRMNPQKDLQDLMEESSDTGWNFYVNILMKT*LLLLV 312
            ++   R +   +L  L  E       F  +  +K  L++++
Sbjct: 269 SKELEKRADFIHELTSLQSEGEQYWKEFLKSYFVKAPLVMVI 310


>SB_12907| Best HMM Match : DUF640 (HMM E-Value=7.4)
          Length = 247

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 207 YESSKRSSRFNGRIVRYWLELLRKYFNEDVITIVGSP 317
           Y+ S  SS F+ R V Y+LE   K  ++DV+   G P
Sbjct: 46  YDVSGASSTFSKRFVEYFLEAFDKEVHQDVLVDFGDP 82


>SB_53902| Best HMM Match : PSI (HMM E-Value=8.7)
          Length = 139

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 418 CLAFSARPFSPNKARWSSILRFSSSAIFSCISMLGEPTIVITSSLKYL 275
           C    ++P S + A WSS+ +  ++ I SCIS    P  V    + YL
Sbjct: 82  CGVTRSQPASCSVAEWSSLQKCLTNQIVSCISHTVHPIKVPCDRVLYL 129


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 243 RIVRYWLELLRKYFNEDVITIVGSPSIEMQEKMAEEE---KRRIEDQR 377
           +I R   E  R+   E +  +  S  + +QEKM  EE   +RR+EDQR
Sbjct: 445 KIDRELEEAARREEEERIRNMEESERLALQEKMRREEEELRRRLEDQR 492


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,310,033
Number of Sequences: 59808
Number of extensions: 473418
Number of successful extensions: 1208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)