Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    48   5e-06
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    31   0.86 
Z93391-6|CAJ85753.1|  198|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical...    28   8.0  
AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 20/46 (43%), Positives = 32/46 (69%)
 Frame = +3

Query: 255 YWLELLRKYFNEDVITIVGSPSIEMQEKMAEEEKRRIEDQRALLGE 392
           YW++L+ KYF     T++G P+ E+ +K+AEEE++RI  Q   LG+
Sbjct: 435 YWVQLVNKYFTAPSATVIGVPNEELVDKIAEEEEKRIAAQCEKLGK 480


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 89  CRNNSGRARPALRLSRIRPSHSAASETLCTHRMNRISY 202
           C  NS R RP++RL  ++ SH A+S T C+++  +I +
Sbjct: 315 CSENSKR-RPSIRLIDLKNSHKASS-TFCSYKDRKIDF 350


>Z93391-6|CAJ85753.1|  198|Caenorhabditis elegans Hypothetical
           protein W04G5.2 protein.
          Length = 198

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 249 VRYWLELLRKYFNED-VITIVGSPS 320
           V  WL++LR + NED VIT+VG+ S
Sbjct: 99  VEQWLKVLRDHANEDIVITLVGNKS 123


>U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical
           protein ZC266.2 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 370 SSILRFSSSAIFSCISMLGEPTIVITSSLKYLRKSSNQYLTIL 242
           SS+ +FSS+ +    S      + I+SS  Y R    QYL +L
Sbjct: 136 SSLKKFSSANVTISKSRTSNGEVTISSSSSYSRSKRRQYLRVL 178


>AL032627-21|CAD66221.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41C4A.19 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = -1

Query: 367 SILRFSSSAIFS-CISMLGEPTIVITSSLKYLRKSSNQYLTILPLNLEDLFEDSYEI*NP 191
           S + FS  A+FS CI++   P  ++ + +  ++   N  ++    +  D+F +   I   
Sbjct: 16  SAVTFSVVAVFSLCITL---P--MVYNYVHGIKSQINHQISFCKHSARDIFSEVNHIRAS 70

Query: 190 VHSVSTESLR----CSGMRWPDAA*PQGWPRSPG 101
            ++ +    R    CSG   P AA P G P  PG
Sbjct: 71  PNNATLREKRQAGDCSGCCLPGAAGPAGTPGKPG 104


>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
           protein Y2H9A.3 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  GPFGETTAETTPGERGQP*G*AASGHR 149
           GP G+  A   PG+ GQP      GHR
Sbjct: 172 GPAGDAGAPGAPGQDGQPGAPGQDGHR 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,576
Number of Sequences: 27780
Number of extensions: 352749
Number of successful extensions: 1192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)