Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30158
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20920.1 68416.m02644 translocation protein-related contains ...    31   1.1  
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i...    29   4.3  
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i...    29   4.3  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    28   5.7  
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At3g57720.1 68416.m06430 protein kinase, putative contains prote...    28   5.7  
At3g26310.1 68416.m03283 cytochrome P450 family protein contains...    28   5.7  

>At3g20920.1 68416.m02644 translocation protein-related contains
           weak similarity to Drosophila translocation protein 1
           (GI:558181) [Drosophila melanogaster]
          Length = 365

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 190 QDFISRMNPQKDLQDLMEESSDTGWNFYVNILMKT*LLLLVPRALRCRKKWPKR 351
           +DF+S M    D +D++EE  D   +   N+L+   LL+   R  +  +   K+
Sbjct: 73  KDFVSFMKNNPDFKDILEEDKDLDTDDIANVLLGKNLLVRCDRVTKTLRPGKKK 126


>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 285 NEDVITIVGSPSIEMQEKMAEEEKRRIEDQRALLG 389
           N DV+T  G     MQ K   EE +  EDQ+ + G
Sbjct: 386 NSDVLTYTGQGGNVMQVKKKGEELKEPEDQKLITG 420


>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
           identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 790

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 285 NEDVITIVGSPSIEMQEKMAEEEKRRIEDQRALLG 389
           N DV+T  G     MQ K   EE +  EDQ+ + G
Sbjct: 386 NSDVLTYTGQGGNVMQVKKKGEELKEPEDQKLITG 420


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 165 SDAAECDGLMRLSLKAGRALPE 100
           SD+   DG++ L ++AGR+LPE
Sbjct: 397 SDSGAFDGVLELLVRAGRSLPE 418


>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase ;similar
           to UDP-glucose:anthocyanin 5-O-glucosyltransferase
           GI:4115563 from [Verbena x hybrida]
          Length = 456

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 13  EEARRCLEHVRSGGE 57
           EE RRCLE V SGGE
Sbjct: 404 EEIRRCLEKVMSGGE 418


>At3g57720.1 68416.m06430 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 359

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 738 VRPVSRCKRETKFRVRKRQTDDVSHYKWFNINGS*FFK 625
           V+ + +  R      RK +  D+   KWF  NGS F K
Sbjct: 5   VKKLKQSLRSGSLEKRKEKEKDIQEEKWFLDNGSIFLK 42


>At3g26310.1 68416.m03283 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 500

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 189 TGFHISYESSK-RSSRFNGRIVRYWLELLRKYFNEDVITIVG 311
           T F +S+E +   S RFN +IVR  LE+L  +   D I  VG
Sbjct: 184 TAFGVSFEGTVLNSDRFN-KIVREALEMLGSFSAADFIPYVG 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,890
Number of Sequences: 28952
Number of extensions: 331488
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)