Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30157
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 76 2e-14
07_01_0578 + 4295386-4296489,4297394-4297507 75 5e-14
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 32 0.37
04_01_0079 + 886004-886531 32 0.37
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.64
09_03_0180 - 13141083-13141808 30 1.1
10_02_0199 + 6668902-6669293,6669825-6669882 30 1.5
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 30 1.5
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 29 2.0
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 29 2.6
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043 29 2.6
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 3.4
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 29 3.4
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 3.4
07_01_0960 - 8065206-8066132,8066231-8066659 29 3.4
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435... 29 3.4
10_06_0174 - 11485684-11485962 28 4.5
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 28 4.5
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 4.5
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 28 4.5
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 28 6.0
05_04_0292 + 19893895-19894983 28 6.0
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 6.0
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 28 6.0
02_05_0073 - 25602268-25603182,25603273-25604190 28 6.0
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 27 7.9
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452... 27 7.9
08_01_0948 - 9405356-9406042,9406214-9406303,9406533-9406644,940... 27 7.9
07_01_0581 + 4320515-4320782,4320954-4321117,4321352-4321366 27 7.9
06_01_0783 + 5857950-5857979,5859474-5860424 27 7.9
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 27 7.9
01_07_0322 + 42719853-42720512 27 7.9
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 27 7.9
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 75.8 bits (178), Expect = 2e-14
Identities = 45/110 (40%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +2
Query: 62 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 238
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 239 HQTSADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
HQTSA+ GGRMFAPTK WR
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWR 112
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = +1
Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
SWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG P
Sbjct: 69 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAP 107
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Frame = +2
Query: 71 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 244
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 245 TSADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
TSA+ GGRMFAPTK WR
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWR 113
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = +1
Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
SWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRG P
Sbjct: 70 SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAP 108
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N + P+F V L G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>04_01_0079 + 886004-886531
Length = 175
Score = 31.9 bits (69), Expect = 0.37
Identities = 26/64 (40%), Positives = 32/64 (50%)
Frame = +1
Query: 229 GGWSPNQC*SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRPHEALAGVGTVAS 408
GG P+ C G G AVA GGG RSG G++ RGW R EALA A
Sbjct: 81 GGNRPDPCRPAGPGGAVA------GGGVLRSG----GDVWRGWR--RSLEALAAEDEAAR 128
Query: 409 NLPN 420
++P+
Sbjct: 129 SVPD 132
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.1 bits (67), Expect = 0.64
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N I +PTF +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>09_03_0180 - 13141083-13141808
Length = 241
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 356 GRMFAPTKPWRALAPSRQTFRTKSGGGG 439
G A T+PWR +P+R+ T SGG G
Sbjct: 4 GGCTASTRPWRYSSPARRKMATASGGLG 31
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +1
Query: 220 REQGGWSPNQC*SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 354
RE GG + SW TGRA A + R R GG R A N G
Sbjct: 30 REGGGGAQ----SWATGRAAAELGRGRKGGRRRGLAQAAANSGEG 70
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 409 LTRRCQRPP-GLRGGEHTSTHDTCYRRHPDRTYEYHHHGHA 290
+TR+ P G+ GG T+ RR P + YE H HG A
Sbjct: 137 ITRKMGEPSSGVTGGAATTVAPKKPRRRPAQAYEDHGHGGA 177
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 353 GGRMFAP-TKPWRALAPSRQTFRTKSGGGGKRLKK 454
GGR+ AP + PW P+R + +SGGGG+ K
Sbjct: 40 GGRLVAPPSAPW----PARARGKNRSGGGGRSATK 70
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 445 PFSPPPGLCSEGLTRRCQR-PPGLRGGEHTSTHDTCYRRH 329
PF PPP + T+R QR P G RG + +T D R H
Sbjct: 583 PFMPPPPPPNNRGTKREQRRPGGERGDRYETTSDQGSRGH 622
>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
Length = 436
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 280 RQHVQYPMISTGLVTSLLAHAVGLPRVLGHRNVNIIDQVR 161
++HV +P S G + L+ A L R+L H + ++ R
Sbjct: 5 KKHVLFPFTSKGHIAGFLSLASRLHRILPHATITLVSTPR 44
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N I +PT +G L + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 195 PRTRGSPTA*ARRLVTKPVLIMGYWTCC 278
P + +PTA A ++ PV+I +W CC
Sbjct: 553 PPSVSAPTANAAPMLPAPVVIEEHWVCC 580
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 455 APLRSVAVPGPSVPFRLRGHIY 520
A R +A PGP+VPF GH+Y
Sbjct: 894 AAYRGMAPPGPAVPF-FNGHVY 914
>07_01_0960 - 8065206-8066132,8066231-8066659
Length = 451
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 262 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRPHEALAGVGTVA 405
G +A I R G R +G +GN+C T P EAL G++A
Sbjct: 280 GEDARLAIIVSFRNNGELRLPRGYYGNVCVPVTVAMPAEALRRRGSLA 327
>04_04_1354 -
32841778-32841983,32842079-32843093,32843184-32843518,
32843590-32844019,32844155-32844214,32844531-32844651,
32845321-32846132
Length = 992
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 511 PSKPERNAGTRYSNAAQRRLF*PFSPPPGLCSEGLTRRCQRPPGLRGGEHTSTH 350
P++ ++ R+ + + P PPP L +GL RC PP L G H
Sbjct: 821 PAQGDQRLAARHPPVLADQGYVPRLPPPVLEDQGLAPRCP-PPALAGQGFVPRH 873
>10_06_0174 - 11485684-11485962
Length = 92
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 360 VCSPPRSPGGRWHRRVKPSEQSPGGG 437
V P GG W R KPS SP GG
Sbjct: 50 VACPLVHEGGGWRWRKKPSSSSPHGG 75
>08_02_1312 +
26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 350 VGGRMFAPTKPWRALAPSRQTFRTKSGGGGKRLKKAPLRSVAVPGPSVPFRLRGH 514
VG + +P R ++ GGG+ + + PLR+ PG P +R H
Sbjct: 46 VGAAVAVVEEPERVVSGGGALPEFVGEGGGEGIYRVPLRAAMHPGRPPPLEVRPH 100
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL+ N ++ +PT V L ++ G S V + GAH G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 425 SGGGGKRLKKAPLRSVAVPGPSVPFRLRG 511
S GG R KKA R A P P P +LRG
Sbjct: 20 SSSGGGRRKKAGRRGEAKPPPPPPPQLRG 48
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 158 RPDLVNDVHVSMSKNSRQP--YCVSKEAGHQTSADHGVLD 271
RP + DV S S +S P SK++GH HG +D
Sbjct: 38 RPSSITDVSRSCSSSSSSPPRSLSSKQSGHADVLAHGAVD 77
>05_04_0292 + 19893895-19894983
Length = 362
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 167 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLK 75
G D WAP GG LHP H++ S L+
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELE 241
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 253 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 122
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 353 GGRMFAPTKPW-RALAPSRQTFRTKSGGGGKRLKKAPLRS 469
GG + PW R P R+ FR+ G+R +AP S
Sbjct: 64 GGEVSPANPPWQRCPPPPRRRFRSPPARDGRRSSRAPTYS 103
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 298 RGGGTHRSGQGAFGNMCRGWTYVRPHEALA 387
RG G HRSG G G++ G + VR A++
Sbjct: 581 RGRGAHRSGGGGGGSVASGRSGVRAVSAMS 610
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 166 PGQ*CSRFYVQELEAALLREQGGWSPNQC*SWGT 267
P + C RF + + L ++G ++ +C WGT
Sbjct: 305 PPEECGRFLLLSIGTGLASDEGLYTAEKCSRWGT 338
>12_01_0559 +
4527769-4527924,4528038-4528129,4528799-4528905,
4528987-4529042,4529196-4529346,4530223-4530528,
4530753-4531597
Length = 570
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 271 VQYPMISTGLVTSLLAHAVGLPRVL 197
V+ P TG S LA AVG+PRVL
Sbjct: 89 VENPHKKTGYSISELAEAVGIPRVL 113
>08_01_0948 -
9405356-9406042,9406214-9406303,9406533-9406644,
9407065-9407162,9407494-9407697,9407796-9408285,
9409711-9409715
Length = 561
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 420 QSPGGGEKG*KRRLCAALLYRVPAFLSGLEGTFIEKIPEAFPWFL 554
Q P + KR LC L+ RVP F S ++ ++ I E +FL
Sbjct: 313 QLPADLHRDIKRYLCLDLVERVP-FFSAMDHQLLDAICERMTYFL 356
>07_01_0581 + 4320515-4320782,4320954-4321117,4321352-4321366
Length = 148
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 412 GLTRRCQRPPGLRGGEHTS 356
G RR +RPPG R EHT+
Sbjct: 90 GAQRRLRRPPGARPTEHTA 108
>06_01_0783 + 5857950-5857979,5859474-5860424
Length = 326
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 445 PFSPPPGLCSEGLTRRCQRPPGLRGG 368
P PPPGL G R P RGG
Sbjct: 124 PLKPPPGLLDGGSVASSPRSPMSRGG 149
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 297 PWWWYS*VRSGCLR*HVSWVDVCSPPRSPGGRWHRRVKPSEQSPGGGEKG 446
P WW S G R + W PP + G R RR PS + G+KG
Sbjct: 28 PPWWCSSSSKGAAREELIW-----PPVTRGKRSRRR-SPSAVAAAAGKKG 71
>01_07_0322 + 42719853-42720512
Length = 219
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 366 SPPRSPGGRWHRRVKPSEQS 425
SPP SPGG H R+ P ++
Sbjct: 15 SPPSSPGGGHHHRLPPKRRA 34
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -3
Query: 319 TYEYHH-HGHAEFGRQH 272
T+++HH HGH FGR H
Sbjct: 144 THDHHHGHGHHLFGRDH 160
>01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 423 SPGGGEKG*KRRLCAALLYRVPAFLSGLEGTFIEKIPEAFPWFL 554
+PG G+K + A+L A+ +E +++ E + WFL
Sbjct: 960 APGEGDKVLSEVITEAVLDMFDAWCENVERPLVQRAKEVYSWFL 1003
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,240,083
Number of Sequences: 37544
Number of extensions: 480505
Number of successful extensions: 1880
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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