Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30157
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                89   2e-18
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     30   1.1  
SB_40201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     29   2.0  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.0  
SB_46613| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                29   3.5  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   6.1  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          27   8.1  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 48/107 (44%), Positives = 59/107 (55%)
 Frame = +2

Query: 68  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 247
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 248 SADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
           SA+                                GGRMFAPTK WR
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWR 106



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 34/39 (87%), Positives = 34/39 (87%)
 Frame = +1

Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
           SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG     P
Sbjct: 63  SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAP 101


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 361 TSTHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIS 251
           T T    Y +HP  T+ YH H      R H Q+P ++
Sbjct: 225 TPTITNGYHQHPQVTHRYHQHPQVTH-RYHQQHPQVT 260



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 340 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIS 251
           Y +HP  T+ YHH  H +   ++ Q+P ++
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVT 441


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = -3

Query: 364 HTSTHDTCYRRHP-----DRTYEYHHHGHAEFGRQHVQYP 260
           H + H+ CYR H         Y Y+ H H  + R H  YP
Sbjct: 9   HQNRHNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYP 48


>SB_40201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 559 RPKNQGKASGIFSINVP-SKPERNAGTRYSNAAQ 461
           RP+ +G+ASG F++N+P  +P R+     S  AQ
Sbjct: 11  RPRPRGRASGNFTVNIPDDEPVRSQPRPRSTPAQ 44


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 358 STHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMISTGLVTS 233
           STH   +R+H  + Y +H H H      H+   +I T  + S
Sbjct: 87  STHRHIHRQHHHQHYRHHRHQHYRHHHHHLIVTIIITITIIS 128


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 364 HTSTHDTCYRRHPDRTYEYHHHGHAEFGRQH 272
           H   H     RH  R + +HHH H E+ R+H
Sbjct: 322 HHHHHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_46613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 445 PFSPPPGLCSEGLTRRCQRPPGLRGGEHTSTHDTCYRR 332
           P   P   CS  + R  +RP G  G  H + H  C R+
Sbjct: 112 PSKVPDIYCSPKMARHRERPRGSYGRSHENLHADCNRK 149


>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 369 PPRSPGGRWHRRVKPSEQSPGGGEK 443
           PP+ P  R     KPSE  PGG +K
Sbjct: 403 PPQPPQARQEPTNKPSEDKPGGKDK 427


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 135  GRGLAAPCTVSLFSEYTDTKGRATDRLI 52
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 358 STHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMISTGLVTSLL 227
           STH   +  H  R +  HHH H      H  +P      VT+++
Sbjct: 565 STHPHHHHLHHHRHHHRHHHYHHHHYPHHHHHPCTIIIFVTTII 608


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -3

Query: 319 TYEYHHHGHAEFGRQHVQYPMISTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTDGRLEH 140
           +Y+  H G  +  R+H Q  +  T    S      GL +V   +   IID+    G  + 
Sbjct: 26  SYKKEHRGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQAQRIIDETAGHGSYKK 85

Query: 139 EREGL 125
           E  GL
Sbjct: 86  EYRGL 90


>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -3

Query: 331 HPDRTYEYHHHGHAEFGRQHVQYPMISTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRT 158
           H  R  ++HHH H    RQ+ Q   I+  ++   +   + +  +  + N+  I  + T
Sbjct: 45  HDHRHLDHHHHNHRYRNRQYHQITTITITIIKITITITITITTIAININIPTIITIIT 102


>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -3

Query: 421 CSEGLTRRCQRPPGLRGGEHTSTHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIST 248
           C  G T    +  G       S   TC+  HP   + Y H+ H  F + H+    +ST
Sbjct: 27  CLLGYTGSTCKKIGKDSANLISPKKTCFPYHPHYHHHYRHNDH-YFHQDHLYRHYLST 83


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 343 CYRRHPDRTYEYHHHGHAEFGRQHVQY 263
           CY +  +  + YHHH H      H Q+
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQH 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,071
Number of Sequences: 59808
Number of extensions: 443891
Number of successful extensions: 1204
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)